View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9900_low_11 (Length: 252)

Name: NF9900_low_11
Description: NF9900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9900_low_11
NF9900_low_11
[»] chr4 (1 HSPs)
chr4 (1-236)||(44000205-44000440)
[»] chr2 (2 HSPs)
chr2 (1-174)||(8357650-8357822)
chr2 (189-221)||(30544415-30544447)
[»] chr3 (3 HSPs)
chr3 (3-174)||(39293904-39294074)
chr3 (3-68)||(35212746-35212811)
chr3 (179-219)||(44301685-44301724)
[»] chr8 (1 HSPs)
chr8 (43-103)||(26894377-26894437)
[»] chr7 (1 HSPs)
chr7 (179-220)||(34947630-34947670)
[»] chr5 (1 HSPs)
chr5 (190-219)||(32440274-32440303)
[»] chr1 (1 HSPs)
chr1 (189-222)||(49223939-49223972)
[»] chr6 (1 HSPs)
chr6 (179-219)||(17829062-17829101)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 44000205 - 44000440
Alignment:
Q  1 cgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttcc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000205 cgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttcc 44000304  T
Q  101 ctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctcacttccactcaataaatgatttttcgagacaaaccttaaaacgactatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000305 ctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctcacttccactcaataaatgatttttcgagacaaaccttaaaacgactatta 44000404  T
Q  201 ttttgagacggagggagtaacaagcaacgatcttta 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  44000405 ttttgagacggagggagtaacaagcaacgatcttta 44000440  T

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Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 8357650 - 8357822
Alignment:
Q  1 cgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttcc 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8357650 cgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttcc 8357749  T
Q  101 ctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctcacttccactcaataaatgattttt 174  Q
    ||| |||||||| ||||||| |||||||||||||||| ||| ||||||||||||||| |||||| |||||||||    
T  8357750 ctgaaatcaaaa-aaactccatgtttaatctaagagcgtaatttgttctcacttccattcaatacatgattttt 8357822  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 30544415 - 30544447
Alignment:
Q  189 aaacgactattattttgagacggagggagtaac 221  Q
    ||||||||||||||| |||||||||||||||||    
T  30544415 aaacgactattatttagagacggagggagtaac 30544447  T

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Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 39294074 - 39293904
Alignment:
Q  3 agctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttccct 102  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39294074 agctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttccct 39293975  T
Q  103 ggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctcacttccactcaataaatgattttt 174  Q
    | ||||||||| |||||| |||||||||||||||| ||||||||||||||||||| | |||| |||||||||    
T  39293974 gaaatcaaaag-aactccatgtttaatctaagagcgtaacttgttctcacttccatttaatacatgattttt 39293904  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 35212746 - 35212811
Alignment:
Q  3 agctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccc 68  Q
    |||||| ||||||||||| || ||||||||   |||||||||||||||||||||||||||||||||    
T  35212746 agctgcagatactgcacgattgatatcttcttgatcaccttcagcaacatgagcaatcacttcccc 35212811  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 44301685 - 44301724
Alignment:
Q  179 acaaaccttaaaacgactattattttgagacggagggagta 219  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  44301685 acaaaccttaaa-cgaccattattttgagacggagggagta 44301724  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 26894437 - 26894377
Alignment:
Q  43 tcagcaacatgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttccctg 103  Q
    ||||||||||||||||||||||||||||| | |||||| | ||||||||||||||| ||||    
T  26894437 tcagcaacatgagcaatcacttcccctgtccttggatccaatgttggaaatgttttacctg 26894377  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 34947630 - 34947670
Alignment:
Q  179 acaaaccttaaaacgactattattttgagacggagggagtaa 220  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  34947630 acaaaccttaaa-cgactattatttagagacggagggagtaa 34947670  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 219
Target Start/End: Original strand, 32440274 - 32440303
Alignment:
Q  190 aacgactattattttgagacggagggagta 219  Q
    ||||||||||||||||||||||||||||||    
T  32440274 aacgactattattttgagacggagggagta 32440303  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 49223972 - 49223939
Alignment:
Q  189 aaacgactattattttgagacggagggagtaaca 222  Q
    ||||||||||||||| ||||||||||||||||||    
T  49223972 aaacgactattatttagagacggagggagtaaca 49223939  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 17829062 - 17829101
Alignment:
Q  179 acaaaccttaaaacgactattattttgagacggagggagta 219  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  17829062 acaaaccttaaaa-gactattattttgagacggagagagta 17829101  T

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