View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9900_low_13 (Length: 250)
Name: NF9900_low_13
Description: NF9900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9900_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 49862068 - 49861833
Alignment:
| Q |
1 |
ccagaactcgaacccaaaaccaattccggttcacacatatcaattgtcacttcttgtctggtcgcttgaaccggcgcagcctccacgggcgctctacaaa |
100 |
Q |
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| T |
49862068 |
ccagaactcgaacccaaaaccaattccggttcacacatatcaattgtcacttcttgtctggtcgcttgaaccggcgcagcctccacgggcgctctacaaa |
49861969 |
T |
|
| Q |
101 |
gcggacatgtagaatgagactgaaaccacatatcaatacaatcaatatgaaaactatgattacatttgggtaaaacccgacctgtttctccatcttcaaa |
200 |
Q |
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| T |
49861968 |
gcggacatgtagaatgagactgaaaccacatatcaatacaatcaatatgaaaactatgattacatttgggtaaaacccgacctgtttctccatcttcaaa |
49861869 |
T |
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| Q |
201 |
ctccgataaacaaaccgcgcattcgaccgcttgatc |
236 |
Q |
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| T |
49861868 |
ctccgataaacaaacagcgcattccaccgcttgatc |
49861833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 224
Target Start/End: Original strand, 13998859 - 13998998
Alignment:
| Q |
85 |
acgggcgctctacaaagcggacatgtagaatgagactgaaaccacatatcaatacaatcaatatgaaaactatgattacatttgggtaaaacccgacctg |
184 |
Q |
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|||||||| | |||||| ||||| || |||||| |||||||||||||||||||| ||| ||||||||||||| || |||||||||||||||||||| | |
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| T |
13998859 |
acgggcgcccgacaaagaggacacgtgtcatgagaatgaaaccacatatcaatacactcagtatgaaaactatgtttgcatttgggtaaaacccgacccg |
13998958 |
T |
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| Q |
185 |
tttctccatcttcaaactccgataaacaaaccgcgcattc |
224 |
Q |
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| T |
13998959 |
tttcaccggattcaaattccgacaaacaaacagcacattc |
13998998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 8434388 - 8434469
Alignment:
| Q |
94 |
ctacaaagcggacatgtagaatgagactgaaaccacatatcaatacaatcaatatgaaaactatgattacatttgggtaaaa |
175 |
Q |
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|||||||| ||||| ||||||||||| ||||||||||||||||||||||| | |||||| | |||||| ||||| ||||||| |
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| T |
8434388 |
ctacaaagaggacaagtagaatgagattgaaaccacatatcaatacaatctaaatgaaacccatgattgcattttggtaaaa |
8434469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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