View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9900_low_14 (Length: 240)
Name: NF9900_low_14
Description: NF9900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9900_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 49862281 - 49862073
Alignment:
| Q |
17 |
aggattctcgtgaacgacaaaacacgactcattggtgaccgaaacgatgatggtgaatcacaactcgactctcccacagcaaaactcttgcaatcggatt |
116 |
Q |
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| T |
49862281 |
aggattctcgtgaacgacaaaacacgactcattggtgaccgaaacgatgatggtgaatcacaactcgactctcccacagcaaaactcttgcaatcggatt |
49862182 |
T |
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| Q |
117 |
cactccttctcggaatctcaacggtaatgtcaaccaatgaagattgcttctcatcagaacatgaggaagaacaagaagaagaaaattccgatacagactg |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49862181 |
cactccttctcggaatctcaacggtaatgtcaaccgatgaagattgcttctcatcagaacatgaggaagaacaagaagaagaaaattccgatacagaccg |
49862082 |
T |
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| Q |
217 |
gttcatttc |
225 |
Q |
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| T |
49862081 |
gttcatttc |
49862073 |
T |
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