View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9900_low_15 (Length: 232)
Name: NF9900_low_15
Description: NF9900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9900_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 38657673 - 38657804
Alignment:
| Q |
12 |
ttggtgtttgaagagcctatggcttgggtataagctgaagaaactttaagcactccaaagtttttcagaagagagatttgttttaccttaaaattttaaa |
111 |
Q |
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| T |
38657673 |
ttggtgtttgaagagcctatggcttgggtataagctgaagaaactttaagcactccaaagtttttcagaagagagattagttttaccttaaaattttaaa |
38657772 |
T |
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| Q |
112 |
ttataaaagtcaagggaaaagtctactgctaa |
143 |
Q |
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| T |
38657773 |
ttataaaagttaagggaaaagtctactgctaa |
38657804 |
T |
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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 38630872 - 38630944
Alignment:
| Q |
59 |
aagcactccaaagtttttcagaagagagatttgttttaccttaaaattttaaattataaaagtcaagggaaaa |
131 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38630872 |
aagcactccaaagttttcaagaagagagatttgttttaccttaaaatttcaaattataaaagtcaagggaaaa |
38630944 |
T |
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