View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9900_low_16 (Length: 214)
Name: NF9900_low_16
Description: NF9900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9900_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 41118322 - 41118509
Alignment:
| Q |
9 |
gaagcagagaagaatacaattataaaaaccagagaatttcatttacctccaatgacgtgtttttctgtgggagaatcttggttacaatttcaagatcagg |
108 |
Q |
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| T |
41118322 |
gaagcagaaaagaatacaattataaaaaccagagaatttcatttacctccaatgacgtgtttttctgtgggagaatcttggttacaatttcaagatcagg |
41118421 |
T |
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| Q |
109 |
tgattggactgttaaatggcgtgcatccaaatgataatcttcctcctgtagataaacataagagaatatgtttaaaatgattatacac |
196 |
Q |
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| T |
41118422 |
tgattggattgttaaatggcgtgcatccaaatgataatcttcctcctgtagataaacataagagaatatgtttaaaatgattatacac |
41118509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 41107859 - 41108061
Alignment:
| Q |
9 |
gaagcagagaagaatacaattataaaaaccagagaatttcatttacctccaatgacgtgtttttctgtgggagaatcttggttacaatttcaagatc--- |
105 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| |
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| T |
41107859 |
gaagcagaaaataatacaattataaaaaccagagaatttcatttacctccaatgatgtgtttttctgtgggagaatctcagttacaatatcaagatcata |
41107958 |
T |
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| Q |
106 |
------------aggtgattggactgttaaatggcgtgcatccaaatgataatcttcctcctgtagataaacataagagaatatgtttaaaatgattata |
193 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |
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| T |
41107959 |
tttaccactaggaggtgattggattgttaaatggcgcgcatccaaatgataatcttcctcctgaagataaacataagagaatatctttaaaataattata |
41108058 |
T |
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| Q |
194 |
cac |
196 |
Q |
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||| |
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| T |
41108059 |
cac |
41108061 |
T |
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