View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9900_low_3 (Length: 432)

Name: NF9900_low_3
Description: NF9900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9900_low_3
NF9900_low_3
[»] chr6 (13 HSPs)
chr6 (181-426)||(3076616-3076861)
chr6 (181-418)||(34017983-34018223)
chr6 (193-406)||(24639074-24639287)
chr6 (201-378)||(10303157-10303336)
chr6 (181-406)||(11012328-11012555)
chr6 (195-395)||(18031725-18031924)
chr6 (260-378)||(19153385-19153505)
chr6 (197-392)||(31454032-31454229)
chr6 (193-395)||(34520368-34520572)
chr6 (48-96)||(3076943-3076991)
chr6 (208-387)||(32528906-32529087)
chr6 (336-384)||(11324385-11324433)
chr6 (261-325)||(22732646-22732710)
[»] chr3 (10 HSPs)
chr3 (182-399)||(19596118-19596338)
chr3 (190-408)||(42105655-42105874)
chr3 (185-392)||(7583049-7583259)
chr3 (261-395)||(43695689-43695825)
chr3 (328-378)||(35503851-35503901)
chr3 (193-299)||(44774515-44774621)
chr3 (329-366)||(34291890-34291927)
chr3 (336-384)||(14788785-14788833)
chr3 (336-366)||(20017555-20017585)
chr3 (336-378)||(44781791-44781833)
[»] chr5 (10 HSPs)
chr5 (193-406)||(6612270-6612485)
chr5 (181-385)||(42457623-42457829)
chr5 (188-378)||(14868192-14868383)
chr5 (182-314)||(33020451-33020583)
chr5 (252-395)||(17971903-17972048)
chr5 (328-406)||(4926705-4926783)
chr5 (284-375)||(16861371-16861464)
chr5 (328-378)||(31124187-31124237)
chr5 (329-378)||(7961270-7961319)
chr5 (336-384)||(704648-704696)
[»] chr1 (13 HSPs)
chr1 (181-426)||(3926566-3926811)
chr1 (275-418)||(27099657-27099802)
chr1 (193-387)||(33134289-33134485)
chr1 (193-387)||(44889059-44889255)
chr1 (261-383)||(51800469-51800593)
chr1 (193-387)||(29642016-29642212)
chr1 (193-272)||(34395436-34395515)
chr1 (295-366)||(5717195-5717268)
chr1 (261-378)||(9484769-9484888)
chr1 (336-384)||(46271930-46271978)
chr1 (334-381)||(34703613-34703660)
chr1 (329-366)||(38274214-38274251)
chr1 (334-378)||(31069569-31069613)
[»] chr2 (5 HSPs)
chr2 (244-407)||(9583461-9583626)
chr2 (181-406)||(32151467-32151694)
chr2 (284-387)||(5589520-5589625)
chr2 (329-378)||(38332172-38332221)
chr2 (336-384)||(2167625-2167673)
[»] chr7 (8 HSPs)
chr7 (247-381)||(10275402-10275538)
chr7 (262-317)||(16298761-16298816)
chr7 (329-381)||(8566898-8566950)
chr7 (265-378)||(37237859-37237974)
chr7 (48-98)||(16298995-16299046)
chr7 (336-383)||(16560010-16560057)
chr7 (336-383)||(16605605-16605652)
chr7 (336-378)||(14315525-14315567)
[»] chr4 (4 HSPs)
chr4 (195-376)||(19233359-19233542)
chr4 (193-395)||(40435051-40435252)
chr4 (336-384)||(52577902-52577950)
chr4 (329-390)||(5634764-5634825)
[»] chr8 (1 HSPs)
chr8 (193-378)||(1590293-1590480)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 181 - 426
Target Start/End: Complemental strand, 3076861 - 3076616
Alignment:
Q  181 aacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggaca 280  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3076861 aacagctagccatagcccaacattgccaggggactaagccaaaaaccatgataattgagggaaaattgaacaaattttttcctcaaccacgagtaggaca 3076762  T
Q  281 gtaacttaattttatccactagacgcaaaatcgagcattctttacgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccaga 380  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3076761 gtaacttaattttatccactagacgcaaaatcgagcattctctacgagaaaatcattttatttctttccttccatatttcccacacattagcaaaccaga 3076662  T
Q  381 tgacgttcaaaattgaatgtcgcaccctcgtaccaccaacaccaaa 426  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  3076661 tgacgttcaaaattgaatgtcgcaccctcgtaccaccaccaccaaa 3076616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 181 - 418
Target Start/End: Original strand, 34017983 - 34018223
Alignment:
Q  181 aacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtagga-c 279  Q
    |||| ||||||||| ||||||||||||||||||||||||||  | ||||  ||||||||||| |||||||||||||||| ||||||||||||| ||||      
T  34017983 aacaactagccataacccaacattgctaggggactaagccaccatccatggtaattgagggataattgaacaaatttttccttcaaccacgagaaggatt 34018082  T
Q  280 agtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaacc 377  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||| |   |||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  34018083 agtaacttaattttgtccactaaacgcaaaatcgagcaatctttaccattaaaaatcctgttatttctttccttccatatttcccacacagtagcgaacc 34018182  T
Q  378 agatgacgttcaaaattgaatgtcgcaccctcgtaccacca 418  Q
    | |||||| | |||| || ||| | |||||| | |||||||    
T  34018183 aaatgacgctaaaaaatgcatgacacacccttggaccacca 34018223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 193 - 406
Target Start/End: Complemental strand, 24639287 - 24639074
Alignment:
Q  193 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 292  Q
    |||||||||||||| ||||||||||||||  | |||| |||||||| |||||| ||||||||||| |  |||||||||||| |||| |||| ||||||||    
T  24639287 tagcccaacattgcaaggggactaagccaccagccatcataattgaaggaaaactgaacaaatttctctttcaaccacgagaaggaaagtagcttaattt 24639188  T
Q  293 tatccactaga--cgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttc 388  Q
    | ||||||| |  | || |||||||||||||||||    ||||||| ||||||||||||| || ||||||||||||    |||||||||| ||||| |||    
T  24639187 tgtccactataatcacataatcgagcattctttaccgttgaaaatcctgttatttctttcttttcatatttcccac----tagcaaaccaaatgacattc 24639092  T
Q  389 aaaattgaatgtcgcacc 406  Q
    || ||||| || ||||||    
T  24639091 aatattgattgccgcacc 24639074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 10303157 - 10303336
Alignment:
Q  201 cattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatccact 300  Q
    |||||| || |||||||||||  | |||| |||||||| |  ||| ||||||||||||   |||||||||||| |||| |||||||||||||||||||||    
T  10303157 cattgcgagaggactaagccaccagccatgataattgaagcgaaaatgaacaaattttgctttcaaccacgagaaggaaagtaacttaattttatccact 10303256  T
Q  301 agacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 378  Q
    |  ||||  ||||||||||||||||    |||| || || |||||||||| |||||||||||||||||| ||||||||||    
T  10303257 aatcgcattatcgagcattctttaccgttgaaagtcctgctatttctttctttccatatttcccacacaatagcaaacca 10303336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 181 - 406
Target Start/End: Complemental strand, 11012555 - 11012328
Alignment:
Q  181 aacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggaca 280  Q
    |||| |||| |||||||||| ||||| |||||| | |||||  ||||||  ||||||||  | || |||||||||||  |||||||||||||| |||| |    
T  11012555 aacaactagtcatagcccaaaattgcgaggggattcagccaccaaccatggtaattgagatataaatgaacaaatttcatcttcaaccacgagaaggaaa 11012456  T
Q  281 gtaacttaattttatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 378  Q
    ||||||| ||||| ||||  | || || ||| |||||||||||||    ||||||||||||||||||||| ||||| |||| ||||||| ||||||| ||    
T  11012455 gtaactttattttgtccatcaaacacataattgagcattctttactgttgaaaatcatgttatttctttctttccacattttccacacagtagcaaatca 11012356  T
Q  379 gatgacgttcaaaattgaatgtcgcacc 406  Q
     |||||  | |||||||| | |||||||    
T  11012355 aatgacaattaaaattgattatcgcacc 11012328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 195 - 395
Target Start/End: Original strand, 18031725 - 18031924
Alignment:
Q  195 gcccaacattgctaggggactaagccaaaaaccataataattga--gggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 292  Q
    |||||||||||||||||||||||||||  |||||| ||||||||  | |||  ||     ||||| | ||||||||||||| |||| ||  |||| ||||    
T  18031725 gcccaacattgctaggggactaagccaccaaccatgataattgatagcgaacctt-----aatttctccttcaaccacgagaaggaaagagactttattt 18031819  T
Q  293 tatccactagacgcaaaatcgagcattcttta-cga-gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaa 390  Q
    | ||||||| | |||| ||| ||||||||||| ||  |||||| |||||||||||||| ||| |||||| ||||||  |||||||||| ||||| |||||    
T  18031820 tgtccactaaatgcaagatcaagcattctttagcgttgaaaattatgttatttctttctttctatattttccacactgtagcaaaccaaatgacattcaa 18031919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 378
Target Start/End: Original strand, 19153385 - 19153505
Alignment:
Q  260 tcttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatat 357  Q
    |||||||||||||  |||| |||||||| ||||| ||||| | ||||||| ||||||| |||||||    ||||||| ||||||||||||| ||| | ||    
T  19153385 tcttcaaccacgaaaaggaaagtaactttattttgtccaccaaacgcaaagtcgagcactctttaccgttgaaaatcctgttatttctttctttctaaat 19153484  T
Q  358 ttcccacacattagcaaacca 378  Q
    |||||||||  ||||||||||    
T  19153485 ttcccacaccatagcaaacca 19153505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 392
Target Start/End: Original strand, 31454032 - 31454229
Alignment:
Q  197 ccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatc 296  Q
    ||||||| || ||||||||||||||  |||||| |||||| |  || ||  |||||||||| | ||| ||||||||  |||| ||  |||| | ||| |     
T  31454032 ccaacatagcgaggggactaagccaccaaccatgataattaaaagagaaaagaacaaatttctcctttaaccacgaaaaggaaagagactttactttgtt 31454131  T
Q  297 cactagacgcaaaatcgagcattcttta-cga-gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaaaa 392  Q
    ||||| ||||| ||||||||| |||||| | | ||||||| ||||||||||||| |||||||||||||| ||  |||||| ||| |||||||| ||||    
T  31454132 cactatacgcataatcgagcaatctttatctatgaaaatcctgttatttctttctttccatatttcccaaactgtagcaagccaaatgacgtttaaaa 31454229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 395
Target Start/End: Original strand, 34520368 - 34520572
Alignment:
Q  193 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 292  Q
    |||||||||||||| || |||||||||||  ||||||  |||||||| || || |||| |||||| |  |||||||||||| | || |||  ||| ||||    
T  34520368 tagcccaacattgcgagaggactaagccaccaaccatggtaattgagagataactgaataaatttctctttcaaccacgagaaagaaagtgcctttattt 34520467  T
Q  293 tatccactagacgcaaaatcgagcattcttta--cgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaa 390  Q
    | ||||| |  |||| ||||||||||||||||     ||||||  ||||||||||||| ||  |||||||||||    |||||||||| |||||||| ||    
T  34520468 tgtccacaatccgcataatcgagcattctttaactttgaaaatgctgttatttctttctttttatatttcccacgtggtagcaaaccaaatgacgtttaa 34520567  T
Q  391 aattg 395  Q
    |||||    
T  34520568 aattg 34520572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 3076991 - 3076943
Alignment:
Q  48 aagaggctaaaatgaaatatatattacgacatcaaagtgtccttcctag 96  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  3076991 aagaggttaaaatggaatatatattacgacatcaaagtgtccttcctag 3076943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 387
Target Start/End: Original strand, 32528906 - 32529087
Alignment:
Q  208 aggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatccactagacgca 307  Q
    ||||||||||||||  | ||||| || ||||  || | |||| ||| ||| | ||||||||||||  |||| ||  |||| ||||| |||| ||  ||||    
T  32528906 aggggactaagccaccatccatagtagttgaaagagacttgagcaagtttctccttcaaccacgaaaaggaaagagactttattttgtccattatgcgca 32529005  T
Q  308 aaatcgagcattcttta--cgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgtt 387  Q
     ||||||||| ||||||  |  |||||| |||||||||||||| |||||||||||| | ||  ||| |||||| ||||||||    
T  32529006 taatcgagcaatctttatccttgaaaattatgttatttctttctttccatatttcctaaactatagaaaaccaaatgacgtt 32529087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 11324433 - 11324385
Alignment:
Q  336 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 384  Q
    ||||||||||||||||||| |||| ||||||  |||||||||| |||||    
T  11324433 tgttatttctttccttccaaattttccacaccgtagcaaaccaaatgac 11324385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 22732646 - 22732710
Alignment:
Q  261 cttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttac 325  Q
    ||||||||||||| |||| ||| |||||| |||||||||||  ||||  ||| ||||||||||||    
T  22732646 cttcaaccacgagaaggaaagtgacttaactttatccactaaccgcattatccagcattctttac 22732710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 182 - 399
Target Start/End: Complemental strand, 19596338 - 19596118
Alignment:
Q  182 acagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacag 281  Q
    |||||||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||| |||  ||||||||||||  ||    
T  19596338 acagctagccatagtccaacattgctaggggactaagccaccaaccatgataattgagggaaaattgaacaaatttttccttacaccacgagtaggttag 19596239  T
Q  282 taacttaattttatccactagacgc-aaaatcgagcattcttta--cgagaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 378  Q
    |||||||||||||||||||||| || ||||||||||| ||||||     ||||||| ||||||||||||||| |||||||||||| | | ||||||||||    
T  19596238 taacttaattttatccactagatgcaaaaatcgagcaatctttattgttgaaaatcctgttatttctttcctcccatatttcccaaagagtagcaaacca 19596139  T
Q  379 gatgacgttcaaaattgaatg 399  Q
    |||||||||||||||||||||    
T  19596138 gatgacgttcaaaattgaatg 19596118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 190 - 408
Target Start/End: Complemental strand, 42105874 - 42105655
Alignment:
Q  190 ccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaa 289  Q
    ||||| ||||||| ||||| |||| |||||||  | |||| ||||||||||||||||||||||| ||||||||||||||||||| | || ||||||||||    
T  42105874 ccataacccaacactgctaagggattaagccaccatccatgataattgagggaaaattgaacaatttttttcttcaaccacgagaaagaaagtaacttaa 42105775  T
Q  290 ttttatccactagacgcaaaatcgagcattctttacga-gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttc 388  Q
    |||| |||| || ||||| ||| | ||| ||||||| |  || ||||||||||||||||| || || ||||| |||||  |||||||||| |||||| ||    
T  42105774 ttttgtccattaaacgcataattgggcactctttaccattaagatcatgttatttctttcttttcaaatttctcacacggtagcaaaccatatgacgctc 42105675  T
Q  389 aaaattgaatgtcgcaccct 408  Q
    ||||  ||| ||||||||||    
T  42105674 aaaaaagaaagtcgcaccct 42105655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 185 - 392
Target Start/End: Complemental strand, 7583259 - 7583049
Alignment:
Q  185 gctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaa 284  Q
    |||||||||| |||| |||||| || ||| |||||||  ||||||  |||||||| || || |||||||||||  |||||||||| ||| |||| |||||    
T  7583259 gctagccataacccagcattgcgagaggattaagccaccaaccatggtaattgagagataaatgaacaaatttcatcttcaaccaggagaaggaaagtaa 7583160  T
Q  285 cttaattttatccactagacgcaaaatcgagcatt-ctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagat 381  Q
    ||| ||||| ||||| | ||||||||||||||||| ||||||    ||||||||| ||||||||||| ||||| | |||||||||| |||||||||| ||    
T  7583159 ctttattttgtccaccaaacgcaaaatcgagcatttctttacatttgaaaatcattttatttctttctttccacaattcccacacaatagcaaaccaaat 7583060  T
Q  382 gacgttcaaaa 392  Q
    ||| |||||||    
T  7583059 gacattcaaaa 7583049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 395
Target Start/End: Complemental strand, 43695825 - 43695689
Alignment:
Q  261 cttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatt 358  Q
    ||||||||||||| |||| ||  |||| ||||| ||||||| |||| |||||||||||||||||  |  |||||| ||| ||||||||||  ||||||||    
T  43695825 cttcaaccacgagaaggaaagagactttattttgtccactaaacgcgaaatcgagcattctttagtattgaaaattatgctatttctttctctccatatt 43695726  T
Q  359 tcccacacattagcaaaccagatgacgttcaaaattg 395  Q
    ||  ||||  |||||||||| |||||| |||||||||    
T  43695725 tcatacaccgtagcaaaccaaatgacgatcaaaattg 43695689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 35503901 - 35503851
Alignment:
Q  328 gaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 378  Q
    ||||||| ||||||||||||| |||||||||||||| ||| ||||||||||    
T  35503901 gaaaatcctgttatttctttctttccatatttcccaaacagtagcaaacca 35503851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 299
Target Start/End: Original strand, 44774515 - 44774621
Alignment:
Q  193 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 292  Q
    |||||||||||||| ||||||||||||||  |||||| |||||||||||| |  | ||||  ||| | ||||||||||||| | || ||| |||| ||||    
T  44774515 tagcccaacattgcgaggggactaagccaccaaccatgataattgagggagatctaaacatttttctccttcaaccacgagaaagaaagtgactttattt 44774614  T
Q  293 tatccac 299  Q
    | |||||    
T  44774615 tgtccac 44774621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 34291927 - 34291890
Alignment:
Q  329 aaaatcatgttatttctttccttccatatttcccacac 366  Q
    |||||||||||||||||||||||||| |||||||||||    
T  34291927 aaaatcatgttatttctttccttccaaatttcccacac 34291890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 14788833 - 14788785
Alignment:
Q  336 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 384  Q
    ||||||||||||||||||| |||||||||||  |||||||||| |||||    
T  14788833 tgttatttctttccttccagatttcccacaccctagcaaaccaaatgac 14788785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 366
Target Start/End: Original strand, 20017555 - 20017585
Alignment:
Q  336 tgttatttctttccttccatatttcccacac 366  Q
    |||||||||||||||||||||||||||||||    
T  20017555 tgttatttctttccttccatatttcccacac 20017585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 378
Target Start/End: Original strand, 44781791 - 44781833
Alignment:
Q  336 tgttatttctttccttccatatttcccacacattagcaaacca 378  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||    
T  44781791 tgttatttctttctttccaaatttcccacacagtagcaaacca 44781833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 193 - 406
Target Start/End: Complemental strand, 6612485 - 6612270
Alignment:
Q  193 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 292  Q
    |||||||||||||| ||||||||||||||  | ||||  ||||||| |||||| ||||||||||| | ||||||||||||| |||| | |||||||||||    
T  6612485 tagcccaacattgcgaggggactaagccaccatccatggtaattgaaggaaaactgaacaaatttctccttcaaccacgagaaggaaaataacttaattt 6612386  T
Q  293 tatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaa 390  Q
    |  ||||||  |||| |||||||||||||||||    ||||||| ||||||||||||| ||||||||||| |||||| |||||||||| |||||||||||    
T  6612385 tgcccactaatcgcataatcgagcattctttaccgttgaaaatcctgttatttctttctttccatatttctcacacagtagcaaaccaaatgacgttcaa 6612286  T
Q  391 aattgaatgtcgcacc 406  Q
     ||||| |||||||||    
T  6612285 tattgattgtcgcacc 6612270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 385
Target Start/End: Complemental strand, 42457829 - 42457623
Alignment:
Q  181 aacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggaca 280  Q
    ||||| || ||||| ||||||| ||| | ||||||||||||  | ||||  |||||||||||||||||||||||||||| ||||||||||||| | || |    
T  42457829 aacagttaaccataacccaacactgccaagggactaagccaccatccatggtaattgagggaaaattgaacaaatttttccttcaaccacgagaaagaga 42457730  T
Q  281 gtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 378  Q
     |||||||||||| ||||||| ||||| ||| ||||| ||||||| |  ||| ||| | || ||||||| |||||| |||| ||||||| ||||||||||    
T  42457729 ataacttaattttgtccactaaacgcataattgagcactctttaccattgaagatcctattgtttcttttcttccaaattttccacacagtagcaaacca 42457630  T
Q  379 gatgacg 385  Q
     ||||||    
T  42457629 tatgacg 42457623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 188 - 378
Target Start/End: Original strand, 14868192 - 14868383
Alignment:
Q  188 agccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaactt 287  Q
    ||||||||||||||| ||| ||||||||||||||  | |||| |||||||| |||||| ||||||||||||  |||||||||| || |||| ||||| ||    
T  14868192 agccatagcccaacaatgcaaggggactaagccaccagccatgataattgaaggaaaaatgaacaaattttgccttcaaccacaagaaggaaagtaattt 14868291  T
Q  288 aattttatccactagacgcaaaatcgagcattcttta-cgagaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 378  Q
    |||||| |||||||   ||| ||| ||||||| |||| ||  |||||  ||||||||||||| || ||||||||| ||||  ||||||||||    
T  14868292 aattttgtccactaattgcataattgagcattatttatcgttaaaattctgttatttctttcttttcatatttcctacacgatagcaaacca 14868383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 314
Target Start/End: Complemental strand, 33020583 - 33020451
Alignment:
Q  182 acagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacag 281  Q
    |||||||||  |||| || |||||| |||||| |||||||  || ||| ||||||||| || || ||||||| |||  |||||||||||||| |||| ||    
T  33020583 acagctagcagtagctcagcattgcgaggggattaagccactaatcatgataattgagagataaatgaacaagtttcatcttcaaccacgagaaggaaag 33020484  T
Q  282 taacttaattttatccactagacgcaaaatcga 314  Q
    |||||||||||||||||| | ||||||||||||    
T  33020483 taacttaattttatccaccaaacgcaaaatcga 33020451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 395
Target Start/End: Original strand, 17971903 - 17972048
Alignment:
Q  252 aaattttttcttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttcc 349  Q
    |||||| || ||||||||||| || || ||| |||| ||||| ||||| |  |||| |||||||| |||||||  |  | |||| ||||||||||||||     
T  17971903 aaatttctttttcaaccacgaataagaaagtgactttattttgtccacaatccgcataatcgagctttctttatcattggaaattatgttatttctttct 17972002  T
Q  350 ttccatatttcccacacattagcaaaccagatgacgttcaaaattg 395  Q
    |||||||||||||||||| |||||||||| |||||||| |||||||    
T  17972003 ttccatatttcccacacagtagcaaaccaaatgacgtttaaaattg 17972048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 4926783 - 4926705
Alignment:
Q  328 gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaaaattgaatgtcgcacc 406  Q
    ||||||||||||||||||||| ||||| ||||| |||||| |||||||||| |||||||| |||||||| || ||||||    
T  4926783 gaaaatcatgttatttctttctttccaaatttctcacacagtagcaaaccaaatgacgtttaaaattgagtgccgcacc 4926705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 375
Target Start/End: Original strand, 16861371 - 16861464
Alignment:
Q  284 acttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaa 375  Q
    ||||||| ||||||||||  ||||| ||||| |||| ||||  |  ||| ||||||||||||||||| |||||||||||||||||| |||||||    
T  16861371 acttaatcttatccactaaccgcaatatcgaacattgtttatcattgaagatcatgttatttctttctttccatatttcccacacactagcaaa 16861464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 31124237 - 31124187
Alignment:
Q  328 gaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 378  Q
    ||||||| ||||||||||||| ||||| |||||||||||| ||||||||||    
T  31124237 gaaaatcctgttatttctttctttccagatttcccacacagtagcaaacca 31124187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 7961270 - 7961319
Alignment:
Q  329 aaaatcatgttatttctttccttccatatttcccacacattagcaaacca 378  Q
    ||||| ||||| ||||||||||||||||||||||||| | | ||||||||    
T  7961270 aaaattatgttgtttctttccttccatatttcccacatagtcgcaaacca 7961319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 704648 - 704696
Alignment:
Q  336 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 384  Q
    ||||||||||||||||||||||||| || ||  |||||||||| |||||    
T  704648 tgttatttctttccttccatatttctcaaactgtagcaaaccaaatgac 704696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 181 - 426
Target Start/End: Original strand, 3926566 - 3926811
Alignment:
Q  181 aacagctagccatagcccaacattgctaggggactaagccaaaaaccataataatt-gagggaaaattgaacaaattttttcttcaaccacgagtaggac 279  Q
    ||||| || ||||||||||||||||||||||||||||||||  |||||| |||||| ||| |||||||||| |   |||| ||||||||||||| ||||     
T  3926566 aacagttaaccatagcccaacattgctaggggactaagccaccaaccatgataatttgagagaaaattgaaaa---ttttccttcaaccacgagaaggaa 3926662  T
Q  280 agtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaacc 377  Q
    |||| ||||||||| ||||||  ||||||||||||||| ||||||| |  ||||||  ||||||||||||| ||||| ||||||||||||||| ||||||    
T  3926663 agtagcttaattttgtccactcaacgcaaaatcgagcactctttaccattgaaaattctgttatttctttctttccaaatttcccacacattaacaaacc 3926762  T
Q  378 agatgacgttcaaaattgaatgtcgcaccctcgtaccaccaacaccaaa 426  Q
    | |||||| |||| |  |||||||||| ||| |  |||||| |||||||    
T  3926763 aaatgacgctcaacaaagaatgtcgcatccttggtccaccaccaccaaa 3926811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 275 - 418
Target Start/End: Original strand, 27099657 - 27099802
Alignment:
Q  275 aggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagc 372  Q
    ||||| |||||| |||||| |||||||  |||||||||||||| ||||||  |  ||||||| ||||||||||||| |||||||||| ||||||| ||||    
T  27099657 aggacggtaactaaattttgtccactaatcgcaaaatcgagcaatctttagcattgaaaatcttgttatttctttctttccatattttccacacagtagc 27099756  T
Q  373 aaaccagatgacgttcaaaattgaatgtcgcaccctcgtaccacca 418  Q
    |||||| |||| | |||||| ||||||||||||||| | |||||||    
T  27099757 aaaccaaatgatgctcaaaaatgaatgtcgcacccttggaccacca 27099802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 387
Target Start/End: Complemental strand, 33134485 - 33134289
Alignment:
Q  193 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 292  Q
    ||||||||||| || ||||||||||||||  ||||||  |||||||  || ||||||| ||| || | ||||||||||||  |||| ||  |||| ||||    
T  33134485 tagcccaacatagcgaggggactaagccaccaaccatggtaattgaaagagaattgaaaaaaattctccttcaaccacgaaaaggaaagagactttattt 33134386  T
Q  293 tatccactagacgcaaaatcgagcattcttt--acgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgtt 387  Q
    | |||||||  |||| |||||||||||||||   |  ||||||  | ||||||||||| |||||||||||||| ||| |||||||||| ||| ||||    
T  33134385 tgtccactattcgcataatcgagcattctttgaccttgaaaattctattatttctttctttccatatttcccaaacagtagcaaaccaaatggcgtt 33134289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 387
Target Start/End: Original strand, 44889059 - 44889255
Alignment:
Q  193 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 292  Q
    ||||||||||| || ||||||||||||||  ||||||  |||||||  || ||||||| ||| || | ||||||||||||  |||| ||  |||| ||||    
T  44889059 tagcccaacatagcgaggggactaagccaccaaccatggtaattgaatgagaattgaaaaaaattctccttcaaccacgaaaaggaaagagactttattt 44889158  T
Q  293 tatccactagacgcaaaatcgagcattcttt--acgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgtt 387  Q
    | |||| ||  |||| |||||||||||||||   |  ||||||  ||||||||||||| |||||||||||||| ||| |||||||||| ||| ||||    
T  44889159 tgtccattattcgcataatcgagcattctttgaccttgaaaattctgttatttctttctttccatatttcccaaacagtagcaaaccaaatggcgtt 44889255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 383
Target Start/End: Complemental strand, 51800593 - 51800469
Alignment:
Q  261 cttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatt 358  Q
    ||||||||||   ||||| || ||||||||||| |||||||   |||| |||||||| ||||||  |  ||||||| ||||||||||||| |||||||||    
T  51800593 cttcaaccacctataggaaagcaacttaattttgtccactaacagcaatatcgagcactctttatcattgaaaatcctgttatttctttctttccatatt 51800494  T
Q  359 tcccacacattagcaaaccagatga 383  Q
    ||||||||  |||||||||| ||||    
T  51800493 tcccacactatagcaaaccaaatga 51800469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 387
Target Start/End: Original strand, 29642016 - 29642212
Alignment:
Q  193 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 292  Q
    |||||||| || || |||||| |||||||  |||| |  |||||||  || ||||||| |||||| ||||| ||||||||  |||| ||  |||| ||||    
T  29642016 tagcccaagatagcgaggggattaagccaccaaccttggtaattgaaagagaattgaataaatttcttctttaaccacgaaaaggaaagagactttattt 29642115  T
Q  293 tatccactagacgcaaaatcgagcattcttt--acgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgtt 387  Q
    ||||||||| || || ||||||||| |||||   |  ||||||  |||| |||||||| |||||||||||||| | | |||||||||| | ||||||    
T  29642116 tatccactatacacataatcgagcaatctttgaccttgaaaattctgttgtttctttctttccatatttcccaaatagtagcaaaccaaaggacgtt 29642212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 34395436 - 34395515
Alignment:
Q  193 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacga 272  Q
    |||||||||||||  |||||||||| |||  |||||| ||||||||| || || ||||||||||| | ||||||||||||    
T  34395436 tagcccaacattgtgaggggactaatccaccaaccatgataattgagagagaactgaacaaatttctccttcaaccacga 34395515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 366
Target Start/End: Complemental strand, 5717268 - 5717195
Alignment:
Q  295 tccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacac 366  Q
    |||||||  |||||||||||||| ||||||| |  ||||||||| ||||||||||| |||||||||| ||||||    
T  5717268 tccactaatcgcaaaatcgagcactctttaccattgaaaatcatattatttctttctttccatattttccacac 5717195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 378
Target Start/End: Complemental strand, 9484888 - 9484769
Alignment:
Q  261 cttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatt 358  Q
    |||||||||| || |||| | | ||||||| ||||| ||||   |||| ||||| |||||||||| |  ||| ||| ||||||||||||| || || |||    
T  9484888 cttcaaccacaagaaggaaattgacttaatcttatctactatttgcaatatcgaacattctttaccattgaatatcttgttatttctttcttttcaaatt 9484789  T
Q  359 tcccacacattagcaaacca 378  Q
    ||||||||| ||||||||||    
T  9484788 tcccacacactagcaaacca 9484769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 46271978 - 46271930
Alignment:
Q  336 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 384  Q
    ||||||||||||| ||||| |||||||||||| |||||||||| |||||    
T  46271978 tgttatttctttctttccagatttcccacacagtagcaaaccaaatgac 46271930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 381
Target Start/End: Original strand, 34703613 - 34703660
Alignment:
Q  334 catgttatttctttccttccatatttcccacacattagcaaaccagat 381  Q
    ||||||||||||||| |||||||||||||| ||| ||||| |||||||    
T  34703613 catgttatttctttctttccatatttcccagacagtagcataccagat 34703660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 38274214 - 38274251
Alignment:
Q  329 aaaatcatgttatttctttccttccatatttcccacac 366  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  38274214 aaaatcctgttatttctttccttccaaatttcccacac 38274251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 378
Target Start/End: Complemental strand, 31069613 - 31069569
Alignment:
Q  334 catgttatttctttccttccatatttcccacacattagcaaacca 378  Q
    |||||||| |||||| ||||| |||||||||||| ||||||||||    
T  31069613 catgttatatctttctttccaaatttcccacacaatagcaaacca 31069569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 244 - 407
Target Start/End: Original strand, 9583461 - 9583626
Alignment:
Q  244 aattgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttat 341  Q
    |||||||||||||||| ||||||||| ||| |||| || | ||||||||| |||||||  |||||||||||||| ||||||| |  ||||||| ||||||    
T  9583461 aattgaacaaatttttccttcaaccaagagaaggaaaggagcttaattttgtccactaatcgcaaaatcgagcaatctttaccattgaaaatcctgttat 9583560  T
Q  342 ttctttccttccatatttcccacacattagcaaaccagatgacgttcaaaattgaatgtcgcaccc 407  Q
    ||||||| ||  |||||||||||||| |||||||||| |||||| | |||| ||||||||||||||    
T  9583561 ttctttctttttatatttcccacacagtagcaaaccaaatgacgctaaaaaatgaatgtcgcaccc 9583626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 181 - 406
Target Start/End: Complemental strand, 32151694 - 32151467
Alignment:
Q  181 aacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggaca 280  Q
    |||||||||||||||||||| ||||| |||||| | || ||  ||| ||  |||||||  || || |||||||||||  |||||||||| ||| |||| |    
T  32151694 aacagctagccatagcccaaaattgcgaggggattcagtcaccaactatggtaattgaaagataaatgaacaaatttcatcttcaaccaagagaaggaaa 32151595  T
Q  281 gtaacttaattttatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 378  Q
    ||| ||| ||||| ||||| | || ||||||||||||||||||||    ||||||| ||||||||||||| ||||| |||||||||||| || ||||| |    
T  32151594 gtagctttattttgtccaccaaacacaaaatcgagcattctttactgttgaaaatcttgttatttctttctttccacatttcccacacagtaccaaacga 32151495  T
Q  379 gatgacgttcaaaattgaatgtcgcacc 406  Q
     |||||  | |||||||| ||| |||||    
T  32151494 aatgacagttaaaattgattgttgcacc 32151467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 387
Target Start/End: Complemental strand, 5589625 - 5589520
Alignment:
Q  284 acttaattttatccactagacgcaaaatcgagcattcttta--cgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagat 381  Q
    |||| ||||| |||||||  |||| |||||| |||||||||  |  ||||||  ||||||||||||| |||||| ||||||| ||| |||||||||| ||    
T  5589625 acttcattttgtccactattcgcataatcgaacattctttaaccttgaaaattttgttatttctttctttccatctttcccaaacagtagcaaaccaaat 5589526  T
Q  382 gacgtt 387  Q
    ||||||    
T  5589525 gacgtt 5589520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 38332172 - 38332221
Alignment:
Q  329 aaaatcatgttatttctttccttccatatttcccacacattagcaaacca 378  Q
    ||||||||||| |||||||| ||||| |||| ||||||| ||||||||||    
T  38332172 aaaatcatgttgtttctttctttccaaattttccacacagtagcaaacca 38332221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 2167625 - 2167673
Alignment:
Q  336 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 384  Q
    ||||||| ||||| |||||||||||||| |||  |||||||||||||||    
T  2167625 tgttattcctttctttccatatttcccaaacagcagcaaaccagatgac 2167673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 381
Target Start/End: Complemental strand, 10275538 - 10275402
Alignment:
Q  247 tgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttc 344  Q
    |||||||||||  | |||||||||||| |||| |||| |||||||||||||||||  ||||  ||||||||||||||||    |||| ||||||||||||    
T  10275538 tgaacaaatttcgtattcaaccacgagaaggaaagtagcttaattttatccactaatcgcattatcgagcattctttactgttgaaagtcatgttatttc 10275439  T
Q  345 tttccttccatatttcccacacattagcaaaccagat 381  Q
    |||| ||||||||||| || ||| ||| |||||||||    
T  10275438 tttctttccatatttctcaaacaatagtaaaccagat 10275402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 16298816 - 16298761
Alignment:
Q  262 ttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagca 317  Q
    ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||    
T  16298816 ttcaaccacgaataggacagtaacttaattttgtccactagacacaagatcgagca 16298761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 8566898 - 8566950
Alignment:
Q  329 aaaatcatgttatttctttccttccatatttcccacacattagcaaaccagat 381  Q
    ||||||||| |||||||||||||||| |||||||| ||  |||||||||||||    
T  8566898 aaaatcatgctatttctttccttccaaatttcccaaactgtagcaaaccagat 8566950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 378
Target Start/End: Original strand, 37237859 - 37237974
Alignment:
Q  265 aaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttccc 362  Q
    |||||| ||||||| || ||||||||||| |||||||   ||   |||||||| ||||||| |  ||| ||  ||||||||||||| || ||||||||||    
T  37237859 aaccaccagtaggaaagcaacttaattttgtccactaacagcgttatcgagcactctttaccattgaagatactgttatttctttctttacatatttccc 37237958  T
Q  363 acacattagcaaacca 378  Q
    ||||| ||||||||||    
T  37237959 acacagtagcaaacca 37237974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 16299046 - 16298995
Alignment:
Q  48 aagaggctaaaatgaaatatatattacga-catcaaagtgtccttcctagca 98  Q
    |||||||||||||||||||||||||||||  || |||||||| |||||||||    
T  16299046 aagaggctaaaatgaaatatatattacgataataaaagtgtctttcctagca 16298995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 16560057 - 16560010
Alignment:
Q  336 tgttatttctttccttccatatttcccacacattagcaaaccagatga 383  Q
    ||||||||||||| |||||||||||||||||  |||||||||| ||||    
T  16560057 tgttatttctttctttccatatttcccacaccgtagcaaaccaaatga 16560010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 16605605 - 16605652
Alignment:
Q  336 tgttatttctttccttccatatttcccacacattagcaaaccagatga 383  Q
    ||||||||||||| |||||||||||||||||  |||||||||| ||||    
T  16605605 tgttatttctttctttccatatttcccacaccgtagcaaaccaaatga 16605652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 378
Target Start/End: Original strand, 14315525 - 14315567
Alignment:
Q  336 tgttatttctttccttccatatttcccacacattagcaaacca 378  Q
    ||||||||||||||||||| ||||||||| || ||||||||||    
T  14315525 tgttatttctttccttccaaatttcccacgcagtagcaaacca 14315567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 376
Target Start/End: Complemental strand, 19233542 - 19233359
Alignment:
Q  195 gcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaatttta 294  Q
    |||||||| ||  ||||||||||||||  | ||||  |||||||  | ||| ||||||||||||  ||||||||||||| |||| |||||||||||||||    
T  19233542 gcccaacactgtgaggggactaagccaccatccatggtaattgaatggaaaatgaacaaattttaccttcaaccacgagaaggaaagtaacttaatttta 19233443  T
Q  295 tccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcccacacattagcaaac 376  Q
    |||||||  | ||  ||||||||||||||||    |||| |||| |||||| |||| ||||||||||  |||||| ||||||||    
T  19233442 tccactaatcacattatcgagcattctttaccgttgaaagtcatattatttatttctttccatatttttcacacagtagcaaac 19233359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 193 - 395
Target Start/End: Complemental strand, 40435252 - 40435051
Alignment:
Q  193 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 292  Q
    |||||||||||||| || |||||||| ||  ||||||  |||||||| ||||  ||||   |||| | |||||||||||| || || ||| |||| ||||    
T  40435252 tagcccaacattgcgagaggactaagtcaccaaccatggtaattgagagaaatctgaa---atttctccttcaaccacgaataagaaagtgactttattt 40435156  T
Q  293 tatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaa 390  Q
    | ||||| |   ||| |||||||| |||||||  |  |||||| |||||||||||||| ||||| |||||||||| | |||||||||| | |||||| ||    
T  40435155 tgtccacaatgtgcataatcgagctttctttatcattgaaaattatgttatttctttctttccagatttcccacataatagcaaaccaaaagacgtttaa 40435056  T
Q  391 aattg 395  Q
    |||||    
T  40435055 aattg 40435051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 52577950 - 52577902
Alignment:
Q  336 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 384  Q
    ||||||||||||||||||| |||||||||||  |||||||||| |||||    
T  52577950 tgttatttctttccttccagatttcccacaccgtagcaaaccaaatgac 52577902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 5634825 - 5634764
Alignment:
Q  329 aaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaa 390  Q
    |||||| ||||||||||||| ||||| | |||||||||| | |||||||| ||||| |||||    
T  5634825 aaaatcctgttatttctttctttccacaattcccacacagttgcaaaccaaatgacattcaa 5634764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 378
Target Start/End: Complemental strand, 1590480 - 1590293
Alignment:
Q  193 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 292  Q
    ||||||||||| || ||||||||||||||  ||||||  |||||||  || ||||||| ||| || | ||||||||||||  |||| ||  |||| ||||    
T  1590480 tagcccaacatagcgaggggactaagccaccaaccatggtaattgaaagagaattgaaaaaaattctccttcaaccacgaaaaggaaagagactttattt 1590381  T
Q  293 tatccactagacgcaaaatcgagcattcttt--acgagaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 378  Q
    | |||||||  |||| |||||||||||||||   |  |||| |  ||||||||||||  |||||||||||||| ||| ||||||||||    
T  1590380 tgtccactattcgcataatcgagcattctttgatcttgaaacttctgttatttctttttttccatatttcccaaacagtagcaaacca 1590293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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