View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9900_low_4 (Length: 423)
Name: NF9900_low_4
Description: NF9900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9900_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Complemental strand, 6968539 - 6968141
Alignment:
| Q |
16 |
gtaagatcaagtgaacaatcgatatcttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaactcagcattatttttcacattgg |
115 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968539 |
gtaagatcaagcgaacaatcaatatcttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaactcagcattatttttcacattgg |
6968440 |
T |
|
| Q |
116 |
ttaactcaatgtcataaatatcatacttcaaaaaattagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968439 |
ttaactcaatgtcataaatatcatacttcaaaaaattagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctct |
6968340 |
T |
|
| Q |
216 |
cttccaaggcttgccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttctttttaggactcattgcaatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968339 |
cttccaaggcttgccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttctttttaggactcattgcaatt |
6968240 |
T |
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| Q |
316 |
gtttcaaacgaagacggatgttcaaatatcacatgactccacttacctcccctttcatattcaccattacctgtgcaatttgtgtaaagctttctctgc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968239 |
gtttcaaacgaagacggatgttcaaatatcacatgactccacttacctcccctttcatattcaccattacctgtgcaatttgtgtaaagctttctctgc |
6968141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 116 - 364
Target Start/End: Original strand, 1000533 - 1000780
Alignment:
| Q |
116 |
ttaactcaatgtcataaatatcatacttcaaaaaa-ttagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctc |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
1000533 |
ttaactcaatgtcataaatatcatacttcaaaaaaattagaaatggcagtaactagtgatgattttcctgttcctggaggaccatagaacaaatagccta |
1000632 |
T |
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| Q |
215 |
tcttccaaggcttgccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttctttttaggactcattgcaat |
314 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| |
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| T |
1000633 |
tcttccaaggcttaccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctatttcttc-ttttaggattcattgcaat |
1000731 |
T |
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| Q |
315 |
tgtttcaaacgaagacggatgttcaaatatcacatgactccacttacctc |
364 |
Q |
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| T |
1000732 |
tgtttcaaa-gaagatggatgttcaaatataacatgactccatttacctc |
1000780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 2177877 - 2177799
Alignment:
| Q |
16 |
gtaagatcaagtgaacaatcgatatcttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaact |
94 |
Q |
| |
|
||||||||||| || |||| ||| |||| ||||||||||| || | ||| ||||||||||||||||||||||||||| |
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| T |
2177877 |
gtaagatcaagcaaagaatcaatagcttcaataacaacaaccgattcacttttgattccaatcaaaagtttccttaact |
2177799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 6971189 - 6971087
Alignment:
| Q |
178 |
tttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttttgcataatactctttagccttactgaatgtaacaagatcat |
277 |
Q |
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||||| || ||||||||||||||||| ||||| ||||| ||||||| | | |||||| ||||||| | || ||| ||||| ||||||| |||||||| |
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| T |
6971189 |
tttccagtccctggaggaccataaagtaaataacctcttttccaagcccttccaattcttgcatagaattcaccagctttactaaatgtaataagatcat |
6971090 |
T |
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| Q |
278 |
caa |
280 |
Q |
| |
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||| |
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|
| T |
6971089 |
caa |
6971087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 44396264 - 44395984
Alignment:
| Q |
16 |
gtaagatcaagtgaacaatcgatatcttctataacaacaactgacttactcgtgattccaatcaaaagtttccttaactcagcattatttttcacattgg |
115 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||| || ||||||||| || | |||||||||| ||||| ||||||| ||||| ||||| | |
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| T |
44396264 |
gtaagatcaagtgaacaatcaatgtcttcaataacaataattgacttacttgtagtctcaatcaaaagcttcctcaactcagtattatccttcactgctg |
44396165 |
T |
|
| Q |
116 |
ttaactcaatgtcataaatatcatacttcaaaaaattagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctct |
215 |
Q |
| |
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||||||| | ||||||| |||||| ||| |||||||| |||||||||| | || |||||| || || |||||||||||| |||| ||||| || || |
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| T |
44396164 |
ttaactctaaatcataaacatcataacccaacaaattagccatagcagcaatcattgttgatttaccagtacctggaggaccaaaaagtaaataacccct |
44396065 |
T |
|
| Q |
216 |
cttccaaggcttgccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttctt |
296 |
Q |
| |
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||||||| || ||||| | |||||| | || ||| ||||| || ||||| | ||| |||| ||||||||||||||| |
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| T |
44396064 |
tttccaagctttaccaatcctagcataaaaatccttacttttactaaaagtaaccaaatcttcaataatctctttcttctt |
44395984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 53395547 - 53395499
Alignment:
| Q |
175 |
gattttcctgttcctggaggaccataaagcaaatagcctctcttccaag |
223 |
Q |
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|||||||| |||||||||||||||||||| | ||| ||||| ||||||| |
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| T |
53395547 |
gattttccagttcctggaggaccataaagaagataacctcttttccaag |
53395499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 1800862 - 1800792
Alignment:
| Q |
175 |
gattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttttgcataata |
245 |
Q |
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||||| ||||||||||||||||||||||| ||||| || | ||||||| ||| || |||||||||||||| |
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| T |
1800862 |
gatttacctgttcctggaggaccataaagtaaataaccgcgtttccaagccttaccgatttttgcataata |
1800792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 2833326 - 2833403
Alignment:
| Q |
175 |
gattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttttgcataatactcttta |
252 |
Q |
| |
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|||||||| |||||||||||||||||||| | ||| || | ||||||| ||| |||| ||| ||||||||||||||| |
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| T |
2833326 |
gattttccagttcctggaggaccataaagtagataaccacgtttccaagcctttccaactttagcataatactcttta |
2833403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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