View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9900_low_5 (Length: 421)
Name: NF9900_low_5
Description: NF9900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9900_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 50 - 405
Target Start/End: Original strand, 56469295 - 56469650
Alignment:
| Q |
50 |
gtcactttcaaagcgtgcaatatattccccactttttcgatcccacaaaaagaaaacagtggaccagaaacaacatcaccggcaactaaatgcctcatgt |
149 |
Q |
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| T |
56469295 |
gtcacctttaaagtgtgcacaatattccccactttttcaataccagagaatgtaaacagtggaccagaaacaacatcaccggcaactaaatgcctcatgt |
56469394 |
T |
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| Q |
150 |
acggttctgcatgcacttccaaataaggcaaccccttcatttccactatttgatcataaacacctttgttaaaacaatctgccacagactttgagatgag |
249 |
Q |
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| T |
56469395 |
acggttctgcatgcacttccaaataaggcaaccccttcatttccactatttgatcataaacacctttgttaaaacaatctgccacagactttgagatgag |
56469494 |
T |
|
| Q |
250 |
gagaactaacatgaccaatggtagcatgaggaggttgttagtaagttcgagaagtatgacacacaaagagacagtcattctcattgtgccaccaaggaag |
349 |
Q |
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| T |
56469495 |
gagaactaacatgaccaatggtagcatgaggaggttgttagtaagttcgagaagaatgacacacaaagagacagtcattctcattgtgccaccaaggaag |
56469594 |
T |
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| Q |
350 |
gatgcagctcccaaaagtgcaaacaaacccacatccaaaactgtaaatggacttaa |
405 |
Q |
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| T |
56469595 |
gatgcagcacccaaaagtgcaaacaaacccacatccaaaactgtaaatggacttaa |
56469650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 155308 - 154930
Alignment:
| Q |
1 |
agcatccgtcaaaggaggctcatcaactactggaaatccgtgatgttctgtcactttcaaagcgtgcaatatattccccactttttcgatcccacaaaaa |
100 |
Q |
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| T |
155308 |
agcatccgtcaaaggaggctcatcaactactggaaatccgtgatgttctgtcactttcaaagcgtgcaatatattccccactttttcgatcccacaaaaa |
155209 |
T |
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| Q |
101 |
gaaaacagtggaccagaaacaacatcaccggcaactaaatgcctcatgtacggttctgcatgcacttccaaataaggcaaccccttcatttccactattt |
200 |
Q |
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|||||||||||||||||||||||||| || |||||||||| ||||||||| || |||||||| |||||| |||||| | ||||||| |||| || | |
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| T |
155208 |
gaaaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgcttccatataaggtagtcccttcaacgccacaatct |
155109 |
T |
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| Q |
201 |
gatcataaacacctttgttaaaacaatctgccacagactttgagatgaggagaactaacatgaccaatggtagcatgaggaggttgttagtaagttcgag |
300 |
Q |
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|||||||||||||||||||||||||||| ||||| | ||| || ||||||||||| |||||||||||||||||||| | | ||| ||||| ||||| || |
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| T |
155108 |
gatcataaacacctttgttaaaacaatcagccactgtcttagaaatgaggagaaccaacatgaccaatggtagcatcaacaagttattagtgagttcaag |
155009 |
T |
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| Q |
301 |
aagtatgacacacaaagagacagtcattctcattgtgccaccaaggaaggatgcagctcccaaaagtgcaaacaaaccc |
379 |
Q |
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|||||||||||| | ||| || ||||||||||| |||||||||||||| ||||| ||||| | || |||||||||||| |
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| T |
155008 |
aagtatgacacatagagaaactgtcattctcatcgtgccaccaaggaaagatgcggctccaaggagagcaaacaaaccc |
154930 |
T |
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