View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9901_high_10 (Length: 354)
Name: NF9901_high_10
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9901_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 13967687 - 13968017
Alignment:
| Q |
9 |
agcaaagggccaacaatgtctagtaaccgcaggtggacgagaaaaacaaaacagcgcaagtgctctagttttccaaagttctcacttcacaggtgaacca |
108 |
Q |
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| T |
13967687 |
agcaaaaggccaaaaatgtctagtaaccgcaggtggacgagataaacaaaacagtgcaagtgctctcgttttcctaagttctcacttcacaggtgaaccg |
13967786 |
T |
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| Q |
109 |
caattaaacnnnnnnnnnnnnnnnnnnnnnnnttttattgtcaccgttattaataataatttcttcttctcgtattttcaaaacaggtgaaccagcacta |
208 |
Q |
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| T |
13967787 |
cagttaaacaaaaaaaaaattaaaattaaaatttt-attgtcaccgttattaataataatttcttcttctcgtattttcaaaacaggtgaaccagcacta |
13967885 |
T |
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| Q |
209 |
acatcggtaacacctaaagtatcttacctaggaagaccatggaagctatattccaaagttgtcataatggactcaaccattgatgctatttttgtccctg |
308 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
13967886 |
acatcggtaacacccaaattatcttacctaggaagaccatggaagctatattccaaagttgtcataatggactcaaccattgatgctatgtttgcccctg |
13967985 |
T |
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| Q |
309 |
aaggttacatggcatggatgggaagtgctttt |
340 |
Q |
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| T |
13967986 |
aaggttacatgccaatggtgggaggtgctttt |
13968017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 231 - 340
Target Start/End: Original strand, 13960744 - 13960853
Alignment:
| Q |
231 |
cttacctaggaagaccatggaagctatattccaaagttgtcataatggactcaaccattgatgctatttttgtccctgaaggttacatggcatggatggg |
330 |
Q |
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||||||||||||||||||||||| ||||||||||||||| || ||||| |||| ||| |||| ||||||| ||||||||||||||| |||||||||| |
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| T |
13960744 |
cttacctaggaagaccatggaagtcatattccaaagttgttattatggattcaaacatcgatgacatttttgatcctgaaggttacatgccatggatggg |
13960843 |
T |
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| Q |
331 |
aagtgctttt |
340 |
Q |
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| T |
13960844 |
aagtgctttt |
13960853 |
T |
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