View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9901_high_11 (Length: 307)
Name: NF9901_high_11
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9901_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 37218252 - 37218435
Alignment:
| Q |
1 |
gttttagaaatgttggtatgagtgagtgatttgatatataaaaatatacaccaacattaataaggatgaatcgagacttttagagagaagtgcagagg-a |
99 |
Q |
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| T |
37218252 |
gttttagaaatgttggtatgagtgagtgatttgatatataaaaatatacaccaacattaataaggatgaatcgagacttttggagagaagtgcagaggaa |
37218351 |
T |
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| Q |
100 |
aaaaataatgatctattataatttcggtaatcgggtaagcctaagaaattgtaaggttattgaataatgtagtcaccacacaag |
183 |
Q |
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| T |
37218352 |
aaaaataatgatctattataatttcggtaatcgggtaagcctaagaaattgtaaggttattgaataatgtagtcaccacacaag |
37218435 |
T |
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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 37218424 - 37218511
Alignment:
| Q |
198 |
tcaccacacaagtttaaaaaggggcatagctagcataattttgttggcgaaattgagggaacgatctaaacaacaatgaatcaatattt |
286 |
Q |
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| T |
37218424 |
tcaccacacaagtttaaaaaggggcatagctagcataattttgttggcgaaattgagggaacg-tctaaacaacaatgaatcaatattt |
37218511 |
T |
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