View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9901_high_19 (Length: 244)
Name: NF9901_high_19
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9901_high_19 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 26835485 - 26835242
Alignment:
| Q |
1 |
atggttgactgcattgattgttgggtgaatatgcagatgaaatgggtgatgaatgaagttctaagactatacccaccatcaccaaatgtgcaaagacaaa |
100 |
Q |
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| T |
26835485 |
atggttgactgcattgattgttgggtgaatatgcagatgaaatgggtgatgaatgaagttttaagactatacccaccatcaccaaatgtgcaaagacaaa |
26835386 |
T |
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| Q |
101 |
caagagaagacattaaagttgataatgtaacagtgcctaatggaaccaacatgtggattgatgtagtaggaatgcaccatgaccctgaattatggggaga |
200 |
Q |
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| T |
26835385 |
caagagaagacattaaagttgataatgtaacagtgcctaatggaaccaacatgtggattgatgtagtagcaatgcaccatgaccctgaattatggggaga |
26835286 |
T |
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| Q |
201 |
tgatgtgaatgagttcaaaccagagaggttcatggatgatgtta |
244 |
Q |
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| T |
26835285 |
tgatgtgaatgagttcaaaccagagaggttcgtcgatgatgtta |
26835242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 45420267 - 45420051
Alignment:
| Q |
28 |
aatatgcagatgaaatgggtgatgaatgaagttctaagactatacccaccatcaccaaatgtgcaaagacaaacaagagaagacattaaagttgataatg |
127 |
Q |
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| T |
45420267 |
aatatgcagatgaaatgggtgatgaatgaagttctaagactatacccaccagcaccaaatgtgcaaagacaagcaagagaagacattcaagttgatgatg |
45420168 |
T |
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| Q |
128 |
taacagtgcctaatggaaccaacatgtggattgatgtagtaggaatgcaccatgaccctgaattatggggagatgatgtgaatgagttcaaaccagagag |
227 |
Q |
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| T |
45420167 |
taacagtgcctaatggaaccaacatgtggattgatgtagtagcgatgcaccatgacccagaattatggggagatgatgtgaatgatttcaaaccagagag |
45420068 |
T |
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| Q |
228 |
gttcatggatgatgtta |
244 |
Q |
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| T |
45420067 |
gttcatggatgatgtta |
45420051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 31 - 244
Target Start/End: Complemental strand, 45410955 - 45410742
Alignment:
| Q |
31 |
atgcagatgaaatgggtgatgaatgaagttctaagactatacccaccatcaccaaatgtgcaaagacaaacaagagaagacattaaagttgataatgtaa |
130 |
Q |
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| T |
45410955 |
atgcagatgaaatgtgtgatgaatgaagttctaagactatacccaccagcaccaaatgtgcaaagacaagcaagagaagatattcaagttgatgatgtaa |
45410856 |
T |
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| Q |
131 |
cagtgcctaatggaaccaacatgtggattgatgtagtaggaatgcaccatgaccctgaattatggggagatgatgtgaatgagttcaaaccagagaggtt |
230 |
Q |
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| T |
45410855 |
cagtgcctaatggaacaaacatgtggattgatgtagtagcgatgcaccatgacccagaattatggggagatgatgtgaatgagttcaaaccagagaggtt |
45410756 |
T |
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| Q |
231 |
catggatgatgtta |
244 |
Q |
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| T |
45410755 |
catggatgatgtta |
45410742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 242
Target Start/End: Complemental strand, 29800022 - 29799808
Alignment:
| Q |
28 |
aatatgcagatgaaatgggtgatgaatgaagttctaagactatacccaccatcaccaaatgtgcaaagacaaacaagagaagacattaaagttgataatg |
127 |
Q |
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||||| |||||||| |||||||||||||||| | | || || |||||| || |||||||||| ||||| ||| | ||||||||||||||| |||||||| |
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| T |
29800022 |
aatattcagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatgttcaaaggcaatctagagaagacattaaacttgataatc |
29799923 |
T |
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| Q |
128 |
taacagtgcctaatggaaccaacatgtggattgatgtagtaggaatgcaccatgaccctgaattatggggagatgatgtgaatgagttcaaaccagagag |
227 |
Q |
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| T |
29799922 |
taacaattcctaatgggaccaatatgtggatcgacgttgttgcaatgcaccatgactcatcattgtggggagaaaatgtaaatgagtttcgaccagaaag |
29799823 |
T |
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| Q |
228 |
gttcatggatgatgt |
242 |
Q |
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| T |
29799822 |
attcatggatgatgt |
29799808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 241
Target Start/End: Complemental strand, 63782 - 63572
Alignment:
| Q |
31 |
atgcagatgaaatgggtgatgaatgaagttctaagactatacccaccatcaccaaatgtgcaaagacaaacaagagaagacattaaagttgataatgtaa |
130 |
Q |
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||||||||||||||||||| || ||||| || ||||| ||||||||||| |||||||||||||| ||| | | || || ||| ||| |||||| ||| |
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| T |
63782 |
atgcagatgaaatgggtgaggagtgaagcacttagactctacccaccatctccaaatgtgcaaaggcaagctaaggaggatattcgagtagataatataa |
63683 |
T |
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| Q |
131 |
cagtgcctaatggaaccaacatgtggattgatgtagtaggaatgcaccatgaccctga-attatggggagatgatgtgaatgagttcaaaccagagaggt |
229 |
Q |
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| T |
63682 |
aggtgcctaaagggaccaacatttggattgacgttgtagcaatgcaccatga-catgacattatgggggaatgatgcaaacaagtttaaaccagagaggt |
63584 |
T |
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| Q |
230 |
tcatggatgatg |
241 |
Q |
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||||| |||||| |
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| T |
63583 |
tcatgaatgatg |
63572 |
T |
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