View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9901_high_20 (Length: 240)
Name: NF9901_high_20
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9901_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25424046 - 25424268
Alignment:
| Q |
1 |
cagcagggggaattagtgatgatttgcatatctccgcataagatttatataactcgccaaggattgagtctttcttggctccacggaaacgtttcatcga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25424046 |
cagcagggggaattagtgatgatttgcatatctccgcataagatttatataactcgccaaggattgagtctttcttggctccacggaaacgtttcatcga |
25424145 |
T |
|
| Q |
101 |
ggagcagagtataatttgttgatgatgtggcagagattgtatggtatccacaactggtgatctatatgttttggacaatgcaagagccatatgatcaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25424146 |
ggagcagagtataatttgttgatgatgtggcagagattgtatggtatccacaactggtgatctatatgttttggacaatgcaagagccatatgatcaatc |
25424245 |
T |
|
| Q |
201 |
cttacctgcaatcaattttgagg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
25424246 |
cttacctgcaatcaattttgagg |
25424268 |
T |
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