View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9901_high_24 (Length: 229)
Name: NF9901_high_24
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9901_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 39470985 - 39470790
Alignment:
| Q |
25 |
ttgtgctccaacatgaagacagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaacc |
124 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39470985 |
ttgtgctccaacatgaagaaagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccttagagttcgccaagcttctaatcaacc |
39470886 |
T |
|
| Q |
125 |
atgataaccgcctccgaataactgtcttggtcatgaaattcccacacactacagaatctgatgtctacgctaaatccattcccatctctgcttctc |
220 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39470885 |
atgataaccgcctctgaataactgtcttagtcatgaaattcccacacactgcagaatctgatgtctacgctaaatccattcccatctctgattctc |
39470790 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 39464761 - 39464567
Alignment:
| Q |
26 |
tgtgctccaacatgaagacagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaacca |
125 |
Q |
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|||||| ||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| || |||||||||||||||| |
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| T |
39464761 |
tgtgcttcaaaatgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccg |
39464662 |
T |
|
| Q |
126 |
tgataaccgcctccgaataactgtcttggtcatgaaattcccacacactacagaatctgatgtctacgctaaatccattcccatctctgcttctc |
220 |
Q |
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||||||||| ||||||||||| |||| ||||| ||| ||||||| || ||||||| ||||||||| |||||||||||||||| |||| ||||| |
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| T |
39464661 |
tgataaccgtctccgaataaccatcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctc |
39464567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 39471978 - 39472164
Alignment:
| Q |
26 |
tgtgctccaacatgaagacagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaacca |
125 |
Q |
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|||||||||| ||||||| || |||||||||||| |||||||||| |||| |||||| |||||||||| | ||||| || |||||||||||||||| |
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| T |
39471978 |
tgtgctccaagatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccg |
39472077 |
T |
|
| Q |
126 |
tgataaccgcctccgaataactgtcttggtcatgaaattcccacacactacagaatctgatgtctacgctaaatccattcccatctc |
212 |
Q |
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||||||||| |||||||||||||| || || || ||||||||||||| |||||| | ||||||||| |||||||| |||| ||||| |
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| T |
39472078 |
tgataaccgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctc |
39472164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 210
Target Start/End: Complemental strand, 39458498 - 39458337
Alignment:
| Q |
49 |
gaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaaccatgataaccgcctccgaataactg |
148 |
Q |
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||||||||| ||||| ||| || | ||| |||||||||||||| || | || || || |||||||||||||||| ||||||||| |||||||||||| |
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| T |
39458498 |
gaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataaccgtctccgaataacta |
39458399 |
T |
|
| Q |
149 |
tcttggtcatgaaattcccacacactacagaatctgatgtctacgctaaatccattcccatc |
210 |
Q |
| |
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|||||||||||||||| |||||||| |||||| ||||||||| |||||||| || ||||| |
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|
| T |
39458398 |
tcttggtcatgaaatttccacacacaacagaaatagatgtctacactaaatcccttgccatc |
39458337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 39486406 - 39486554
Alignment:
| Q |
31 |
tccaacatgaagacagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaaccatgata |
130 |
Q |
| |
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||||| ||||||| || ||||||||| ||||||||| || | ||| |||||||||||||| || | || || || |||||||||||||||| ||||| |
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| T |
39486406 |
tccaagatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgata |
39486505 |
T |
|
| Q |
131 |
accgcctccgaataactgtcttggtcatgaaattcccacacactacaga |
179 |
Q |
| |
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|||| ||||||||||| |||||||||| |||||||||||||| ||||| |
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| T |
39486506 |
accgtctccgaataaccatcttggtcatcaaattcccacacaccacaga |
39486554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 39480338 - 39480452
Alignment:
| Q |
49 |
gaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaaccatgataaccgcctccgaataactg |
148 |
Q |
| |
|
||||||||| ||||||||| || | ||| |||||||||||||| || | || ||||| |||||||||||||||| ||||||||| ||||||||||||| |
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| T |
39480338 |
gaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgtctccgaataactg |
39480437 |
T |
|
| Q |
149 |
tcttggtcatgaaat |
163 |
Q |
| |
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| ||||||||||||| |
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| T |
39480438 |
ttttggtcatgaaat |
39480452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 39454588 - 39454743
Alignment:
| Q |
33 |
caacatgaagacagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaaccatgataac |
132 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| ||| | ||| || ||| ||||||| || | |||||||| || ||||||||||||| ||||||| |
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| T |
39454588 |
caacatgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataac |
39454687 |
T |
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| Q |
133 |
cgcctccgaataactgtcttggtcatgaaattcccacacactacagaatctgatgt |
188 |
Q |
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|| |||||||||||||| || ||| | ||||| |||||| | || ||| ||||||| |
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| T |
39454688 |
cgtctccgaataactgttttagtcctcaaatttccacacgccactgaaactgatgt |
39454743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 39450942 - 39451128
Alignment:
| Q |
26 |
tgtgctccaacatgaagacagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaacca |
125 |
Q |
| |
|
|||||| ||| ||||||| || ||||||||||||||||||||||| | ||| | ||||||||||| || | || ||||| |||||||||||||| | |
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| T |
39450942 |
tgtgcttcaagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcg |
39451041 |
T |
|
| Q |
126 |
tgataaccgcctccgaataactgtcttggtcatgaaattcccacacactacagaatctgatgtctacgctaaatccattcccatctc |
212 |
Q |
| |
|
||||||||| |||||| ||||||| || || || ||||||||||| | ||||| ||||||| || |||||||| |||| ||||| |
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|
| T |
39451042 |
tgataaccgtctccgagtaactgttttagttatcaaattcccacatatatcagaaaatgatgtcaacactaaatcccttcctatctc |
39451128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 39460192 - 39460354
Alignment:
| Q |
26 |
tgtgctccaacatgaagacagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaacca |
125 |
Q |
| |
|
|||||||||| ||||||| || ||||| ||||||||||||||||||| | | ||||||| ||| || | |||||||| |||||||||| ||||| |
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| T |
39460192 |
tgtgctccaagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccg |
39460291 |
T |
|
| Q |
126 |
tgataaccgcctccgaataactgtcttggtcatgaaattcccacacactacagaatctgatgt |
188 |
Q |
| |
|
|||||| ||||||||||| |||||| | ||||||||| ||||| |||| ||||||| ||||| |
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|
| T |
39460292 |
tgataagcgcctccgaattactgtcctagtcatgaaactcccatacacatcagaatccgatgt |
39460354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 39475453 - 39475634
Alignment:
| Q |
31 |
tccaacatgaagacagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaaccatgata |
130 |
Q |
| |
|
||||| ||||||| || ||||||||||||||||||||||||| | | | |||||| |||| | | ||||| | |||||||||||||| | ||||| |
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| T |
39475453 |
tccaagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgata |
39475552 |
T |
|
| Q |
131 |
accgcctccgaataactgtcttggtcatgaaattcccacacactacagaatctgatgtctacgctaaatccattcccatctc |
212 |
Q |
| |
|
|||| |||||| ||||||| || || || ||||||||||||| |||||| ||||||| || |||||||| |||| ||||| |
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|
| T |
39475553 |
accgtctccgagtaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctc |
39475634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 43312717 - 43312608
Alignment:
| Q |
49 |
gaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaaccatgataaccgcctccgaataactg |
148 |
Q |
| |
|
||||||||||||||||||| ||| | ||| || ||| |||| || || | ||||| || |||||||| ||||||| ||||||||| ||||| |||| | |
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| T |
43312717 |
gaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgtctccgtgtaaccg |
43312618 |
T |
|
| Q |
149 |
tcttggtcat |
158 |
Q |
| |
|
|||||||||| |
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| T |
43312617 |
tcttggtcat |
43312608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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