View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9901_high_4 (Length: 433)

Name: NF9901_high_4
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9901_high_4
NF9901_high_4
[»] chr2 (4 HSPs)
chr2 (1-218)||(7390816-7391033)
chr2 (1-218)||(19586079-19586296)
chr2 (274-392)||(7390642-7390760)
chr2 (274-392)||(19586352-19586470)
[»] chr4 (5 HSPs)
chr4 (1-218)||(11657812-11658029)
chr4 (274-392)||(11658085-11658203)
chr4 (275-392)||(50234339-50234456)
chr4 (1-118)||(50233880-50233997)
chr4 (111-216)||(50234183-50234288)
[»] scaffold1463 (2 HSPs)
scaffold1463 (274-392)||(159-277)
scaffold1463 (107-216)||(330-437)
[»] chr1 (2 HSPs)
chr1 (276-392)||(42837099-42837219)
chr1 (171-216)||(42836991-42837036)
[»] chr7 (1 HSPs)
chr7 (153-218)||(21316109-21316176)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 7391033 - 7390816
Alignment:
Q  1 caaacctacacaaaagaaagaaagaaagacaacacaatcataaagagtcaactaatggtgtgatattaaaattcagaacattcattagaaccttgaaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7391033 caaacctacacaaaagaaagaaagaaagacaacacaatcataaagagtcaactaatggtgtgatattaaaattcagaacattcattagaaccttgaaacg 7390934  T
Q  101 ttcagattcattagaacattcattatcaattttggacactaaagttcaatacctgtgctctttttctcttgattcaagtaactataactgtgtggacctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7390933 ttcagattcattagaacattcattatcaattttggacactaaagttcaatacctgtgctctttttctcttgattcaagtaactataactgtgtggacctt 7390834  T
Q  201 cattagaacctacaaatt 218  Q
    ||||||||||||||||||    
T  7390833 cattagaacctacaaatt 7390816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 19586079 - 19586296
Alignment:
Q  1 caaacctacacaaaagaaagaaagaaagacaacacaatcataaagagtcaactaatggtgtgatattaaaattcagaacattcattagaaccttgaaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19586079 caaacctacacaaaagaaagaaagaaagacaacacaatcataaagagtcaactaatggtgtgatattaaaattcagaacattcattagaaccttgaaacg 19586178  T
Q  101 ttcagattcattagaacattcattatcaattttggacactaaagttcaatacctgtgctctttttctcttgattcaagtaactataactgtgtggacctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19586179 ttcagattcattagaacattcattatcaattttggacactaaagttcaatacctgtgctctttttctcttgattcaagtaactataactgtgtggacctt 19586278  T
Q  201 cattagaacctacaaatt 218  Q
    ||||||||||||||||||    
T  19586279 cattagaacctacaaatt 19586296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 7390760 - 7390642
Alignment:
Q  274 cgttcagaaattcatccataattcaagtagaagaacataaacaaagaagtagcatgattgcaaggtattgaattgagactgaaacacagagaaagtaacg 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7390760 cgttcagaaattcatccataattcaagtagaagaacataaacaaagaagtagcatgattgcaaggtattgaattgagactgaaacacagagaaagtaacg 7390661  T
Q  374 attacaaaaactaacaatg 392  Q
    |||||||||||||||||||    
T  7390660 attacaaaaactaacaatg 7390642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 19586352 - 19586470
Alignment:
Q  274 cgttcagaaattcatccataattcaagtagaagaacataaacaaagaagtagcatgattgcaaggtattgaattgagactgaaacacagagaaagtaacg 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19586352 cgttcagaaattcatccataattcaagtagaagaacataaacaaagaagtagcatgattgcaaggtattgaattgagactgaaacacagagaaagtaacg 19586451  T
Q  374 attacaaaaactaacaatg 392  Q
    |||||| ||||||||||||    
T  19586452 attacagaaactaacaatg 19586470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 11657812 - 11658029
Alignment:
Q  1 caaacctacacaaaagaaagaaagaaagacaacacaatcataaagagtcaactaatggtgtgatattaaaattcagaacattcattagaaccttgaaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11657812 caaacctacacaaaagaaagaaagaaagacaacacaatcataaagagtcaattaatggtgtgatattaaaattcagaacattcattagaaccttgaaacg 11657911  T
Q  101 ttcagattcattagaacattcattatcaattttggacactaaagttcaatacctgtgctctttttctcttgattcaagtaactataactgtgtggacctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11657912 ttcagattcattagaacattcattatcaattttggacactaaagttcaatacctgtgctctttttctcttgattcaagtaactataactgtgtggacctt 11658011  T
Q  201 cattagaacctacaaatt 218  Q
    ||||||||||||||||||    
T  11658012 cattagaacctacaaatt 11658029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 11658085 - 11658203
Alignment:
Q  274 cgttcagaaattcatccataattcaagtagaagaacataaacaaagaagtagcatgattgcaaggtattgaattgagactgaaacacagagaaagtaacg 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11658085 cgttcagaaattcatccataattcaagtagaagaacataaacaaagaagtagcatgattgcaaggtattgaattgagactgaaacacagagaaagtaacg 11658184  T
Q  374 attacaaaaactaacaatg 392  Q
    |||||||||||||||||||    
T  11658185 attacaaaaactaacaatg 11658203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 275 - 392
Target Start/End: Original strand, 50234339 - 50234456
Alignment:
Q  275 gttcagaaattcatccataattcaagtagaagaacataaacaaagaagtagcatgattgcaaggtattgaattgagactgaaacacagagaaagtaacga 374  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| |    
T  50234339 gttcataaattcatccataattcaagtagaagaacataaacagagaagtagcatggttgcaaggtattgaattgagactgaaacacagataaaataacta 50234438  T
Q  375 ttacaaaaactaacaatg 392  Q
    ||||||||||||||||||    
T  50234439 ttacaaaaactaacaatg 50234456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 50233880 - 50233997
Alignment:
Q  1 caaacctacacaaaagaaagaaagaaagacaacacaatcataaagagtcaactaatggtgtgatattaaaattcagaacattcattagaaccttgaaacg 100  Q
    |||||||||| ||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  50233880 caaacctacataaaagaaagaaagaaagacaacacaataaaaaagagtcaattaatggtgtgatactaaaattcaaaacatttattagaaccttgaaacg 50233979  T
Q  101 ttcagattcattagaaca 118  Q
    ||||||||||||||||||    
T  50233980 ttcagattcattagaaca 50233997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 50234183 - 50234288
Alignment:
Q  111 ttagaacattcattatcaattttggacactaaagttcaatacctgtgctctttttctcttgattcaagtaactataactgtgtggaccttcattagaacc 210  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| |  |||||||||||||||||| |||||||||||||||||||    
T  50234183 ttagaacaatcattatcaattttggatactaaaattcaatacctgtgctctttttctcctagttcaagtaactataactgcgtggaccttcattagaacc 50234282  T
Q  211 tacaaa 216  Q
    ||||||    
T  50234283 tacaaa 50234288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1463 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold1463
Description:

Target: scaffold1463; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 277 - 159
Alignment:
Q  274 cgttcagaaattcatccataattcaagtagaagaacataaacaaagaagtagcatgattgcaaggtattgaattgagactgaaacacagagaaagtaacg 373  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  277 cgttcataaattcatccataattcaagtagaagaacataaacagagaaatagcatgattgcaaggtattcaattgagactgaaacatagagaaagtaacg 178  T
Q  374 attacaaaaactaacaatg 392  Q
    || ||||||||||||||||    
T  177 atcacaaaaactaacaatg 159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1463; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 437 - 330
Alignment:
Q  107 ttcattagaacattcattatcaattttggacactaaagttcaatacctgtgctctttttctcttgattcaagtaactataactgtgtggaccttcattag 206  Q
    |||||||||||| |||||||||  ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  437 ttcattagaacaatcattatca--tttggacactaaaattcaatacctgcgctctttttctcctgattcaagtaactataactgtgtggaccttcattag 340  T
Q  207 aacctacaaa 216  Q
    ||||||||||    
T  339 aacctacaaa 330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 392
Target Start/End: Original strand, 42837099 - 42837219
Alignment:
Q  276 ttcagaaattcatccataattcaagtagaagaa---cataaacaaagaagtagcatgattgcaaggtattgaattgagactgaaacacagagaaagtaac 372  Q
    |||||||||||||||||||||||||||||||||   |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  42837099 ttcagaaattcatccataattcaagtagaagaagagcataaaaagagaagtggcatgattgcaaggtattgaattgagactgaaacacagagaaagaaac 42837198  T
Q  373 g-attacaaaaactaacaatg 392  Q
    | | ||||| |||||||||||    
T  42837199 gaaatacaacaactaacaatg 42837219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 42836991 - 42837036
Alignment:
Q  171 gattcaagtaactataactgtgtggaccttcattagaacctacaaa 216  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  42836991 gattcaagtaagtataactgtgtggaccttcattagaacctacaaa 42837036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 21316109 - 21316176
Alignment:
Q  153 ctgtgctctttttctctt--gattcaagtaactataactgtgtggaccttcattagaacctacaaatt 218  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||    
T  21316109 ctgtgttctttttctcttcagattcaagtaactatatctgtgtggaccttcattagaacctacaaatt 21316176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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