View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9901_high_8 (Length: 375)
Name: NF9901_high_8
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9901_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 6651459 - 6651817
Alignment:
| Q |
18 |
gtttccagccaaattccctgcagacatagcagaaagtccttggcattccgtctttcacatccgacacaagcccatttgtaggtgtcaactcattcctctc |
117 |
Q |
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| T |
6651459 |
gtttccagccaaattccctgcagacatagcagaaagtccttggcattccgtctttcacatccgacacaagcccatttgtaggtgtcagctcattcctctc |
6651558 |
T |
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| Q |
118 |
tccaacttttaacatttttcttcatattcacttgttgagtctgagacatatctcgaacatatttagtaagctgagtaaccaccaccat------------ |
205 |
Q |
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| T |
6651559 |
tccaacttttaacatttttcttcatattcacttgttgagtctgagacatatctcgaacatatttagaaagctgagtaaccaccaccatctgcgctctcac |
6651658 |
T |
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| Q |
206 |
aatgctcctctgcaaaagatccccgcaatggcacaccaattactatagtattaccaaatgaaggatcatcttctccaagttcaatttctaaatcaatctc |
305 |
Q |
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| T |
6651659 |
catgctcctctgcaaaagatccccgcaatggcacaccaattactatagtattaccaaatgaaggatcatcttctccaagttcaatttctaaatcaatctc |
6651758 |
T |
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| Q |
306 |
ttcaccaatcacaaccacgtgatgcctctgtacttgttgaataaaattcatatcatcct |
364 |
Q |
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| T |
6651759 |
ttcaccaatcacaaccacgtaatgcctctgtacttgttgaataaaattcatatcatcct |
6651817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 368
Target Start/End: Original strand, 5126557 - 5126922
Alignment:
| Q |
25 |
gccaaattccctgcagacatagcagaaagtccttggcattccgtctttcacatccgacacaagcccatttgtaggtgtcaactcattcctctctccaact |
124 |
Q |
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| T |
5126557 |
gccaaattccctgcagacagagcagaaaatccttggtgtcccgtctttcacat-cgacataagcccacttgtaggtatctgcccattcctctctccatct |
5126655 |
T |
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| Q |
125 |
tttaaca---tttttcttcatattcacttgttgagtctgagacatatctcgaacatatttagtaagctgagtaaccaccaccat--------------aa |
207 |
Q |
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||||||| ||||||||| | ||||| ||||| |||||||||||||| || ||| |||| |||||||| |||| |||||| | |
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| T |
5126656 |
tttaacaacctttttcttccttttcacctgttggttctgagacatatcttgagcatcattagaaagctgagaaaccgtcaccatctgcttgctctcacca |
5126755 |
T |
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| Q |
208 |
tgctcctctgcaaaagatccccgcaatggcacaccaattactatagtattaccaaatgaaggatcatcttctccaagttcaatttctaaatcaatctctt |
307 |
Q |
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| T |
5126756 |
tgctcttctgcagaagattcccgcaacggcgcaccgattagtgttgtgttaccaaatgaaggatcatcttcaccaggtccaatttctaaatcaatctctt |
5126855 |
T |
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| Q |
308 |
caccaa------tcacaaccacgtgatgcctctgtacttgttgaataaaattcatatcatcctatgc |
368 |
Q |
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|||||| ||||||||| ||||||||| ||| |||| ||||| ||||||||||||||| |||| |
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| T |
5126856 |
caccaatctccctcacaaccaagtgatgcctttgtgcttgctgaatcaaattcatatcatccaatgc |
5126922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 261 - 363
Target Start/End: Original strand, 5138064 - 5138172
Alignment:
| Q |
261 |
aaatgaaggatcatcttctccaagttcaatttctaaatcaatctcttcaccaa------tcacaaccacgtgatgcctctgtacttgttgaataaaattc |
354 |
Q |
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||||||||||||||| |||||| || ||||||||||||||||||||||||||| ||||||||| ||||||||| ||| |||| ||||| |||||| |
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| T |
5138064 |
aaatgaaggatcatcctctccaggtccaatttctaaatcaatctcttcaccaatctccttcacaaccaagtgatgcctatgtgcttgctgaatcaaattc |
5138163 |
T |
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| Q |
355 |
atatcatcc |
363 |
Q |
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||||||||| |
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| T |
5138164 |
atatcatcc |
5138172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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