View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9901_low_10 (Length: 375)

Name: NF9901_low_10
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9901_low_10
NF9901_low_10
[»] chr2 (7 HSPs)
chr2 (13-357)||(45034821-45035169)
chr2 (237-357)||(45033250-45033374)
chr2 (189-329)||(17308534-17308676)
chr2 (283-357)||(1015657-1015735)
chr2 (283-329)||(4399574-4399620)
chr2 (283-329)||(30191518-30191564)
chr2 (188-250)||(25306663-25306724)
[»] chr8 (3 HSPs)
chr8 (48-251)||(35673508-35673708)
chr8 (199-357)||(1174961-1175124)
chr8 (238-357)||(30634325-30634449)
[»] chr4 (7 HSPs)
chr4 (199-326)||(11809896-11810023)
chr4 (188-265)||(25054154-25054231)
chr4 (283-357)||(25054273-25054351)
chr4 (199-251)||(18807583-18807635)
chr4 (283-357)||(28395653-28395731)
chr4 (286-329)||(4847817-4847860)
chr4 (197-232)||(52520502-52520537)
[»] chr5 (10 HSPs)
chr5 (235-357)||(25725904-25726031)
chr5 (237-329)||(40382886-40382978)
chr5 (256-357)||(10412281-10412385)
chr5 (256-357)||(10410708-10410812)
chr5 (189-357)||(25502121-25502295)
chr5 (188-247)||(4895933-4895992)
chr5 (188-268)||(10412189-10412268)
chr5 (189-248)||(33689805-33689863)
chr5 (197-251)||(21637365-21637419)
chr5 (283-357)||(25507034-25507113)
[»] chr1 (6 HSPs)
chr1 (237-357)||(44782279-44782406)
chr1 (237-329)||(46679590-46679683)
chr1 (188-247)||(3284438-3284497)
chr1 (188-247)||(9311965-9312024)
chr1 (256-312)||(9217542-9217597)
chr1 (217-249)||(35891592-35891624)
[»] chr3 (7 HSPs)
chr3 (255-357)||(4602202-4602307)
chr3 (191-268)||(4608938-4609014)
chr3 (236-329)||(27682083-27682173)
chr3 (303-357)||(4609061-4609119)
chr3 (283-347)||(28133655-28133723)
chr3 (202-248)||(9032939-9032985)
chr3 (189-251)||(26667219-26667279)
[»] chr6 (7 HSPs)
chr6 (283-357)||(24544664-24544742)
chr6 (189-247)||(15868329-15868387)
chr6 (189-247)||(33869183-33869241)
chr6 (188-247)||(14620447-14620506)
chr6 (283-357)||(34350430-34350509)
chr6 (192-232)||(19645593-19645633)
chr6 (197-232)||(5378633-5378668)
[»] chr7 (6 HSPs)
chr7 (189-251)||(21631451-21631513)
chr7 (236-297)||(29924536-29924598)
chr7 (191-251)||(9878368-9878428)
chr7 (256-317)||(964997-965057)
chr7 (283-329)||(21464441-21464487)
chr7 (197-232)||(28124883-28124918)
[»] scaffold0251 (1 HSPs)
scaffold0251 (188-247)||(6162-6221)
[»] scaffold0060 (1 HSPs)
scaffold0060 (188-251)||(9189-9252)
[»] scaffold0245 (1 HSPs)
scaffold0245 (188-248)||(11035-11095)


Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 45034821 - 45035169
Alignment:
Q  13 agcacagagcctcaagctttctcacacattctcttttttggcttggacctcatctttgttgggcttcagcttggcttcctcagcatttactatcagtctt 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  45034821 agcacagagccttaagctttctcacacattctcttttttggcttggacctcatctttgttgggctttagcttggcttcctcagcatttactatcggtctt 45034920  T
Q  113 tgttttttgctagtttacacccattttacttaggcattacaatctagtgagaataaattgtgtatgtttccttacatttcaaattcaaattggtgaattt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45034921 tgttttttgctagtttacacccattttacttaggcattacaatctagtgagaataaattgtgtatgtttccttacatttcaaactcaaattggtgaattt 45035020  T
Q  213 ccctattttgagtttgagggggactattagagtatagtgtagaagataacttggagatcaagttatctatgtagaaagttagttagggatttagttactc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  45035021 ccctattttgagtttgagggggactattagagtatagtgtagaagataacttggagagcaagttatctatgtagaaagttagttagggagttagttactc 45035120  T
Q  313 caaatcactataaata----acacctatgtaatatttcatatcttttat 357  Q
    ||||||||||||||||    ||||||||||||||||||| |||||||||    
T  45035121 caaatcactataaataagctacacctatgtaatatttcaaatcttttat 45035169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 237 - 357
Target Start/End: Original strand, 45033250 - 45033374
Alignment:
Q  237 tattagagtatagtgtagaagataacttggagatcaagttatctatgtagaaagttagttagggatttagttactccaaatcactataaata----acac 332  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||    ||||    
T  45033250 tattagagtatagtgaagaagataacttggagagcaagttatctatgtagaaagttagttagggagttagttaccccaaatcactgtaaataagctacac 45033349  T
Q  333 ctatgtaatatttcatatcttttat 357  Q
    ||||||| || ||||||||||||||    
T  45033350 ctatgtactaattcatatcttttat 45033374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 189 - 329
Target Start/End: Original strand, 17308534 - 17308676
Alignment:
Q  189 tttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtatagtgtagaagataacttg-gagatcaagt--tatctat-gt 284  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| | |||| | |  |   |||  || |||| ||    
T  17308534 tttcaaactcaaattggtgaatttccccattttgagtttgagggggactattagaatatagtg-agaata-aactagagttacttagtggtaactatagt 17308631  T
Q  285 agaaagttagttagggatttagttactccaaatcactataaataa 329  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  17308632 agaaagttagttagggagttagttactccaaatcactataaataa 17308676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 1015657 - 1015735
Alignment:
Q  283 gtagaaagttagttagggatttagttactccaaatcactataaata----acacctatgtaatatttcatatcttttat 357  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||    ||||||||||| |||| ||||||||||||    
T  1015657 gtagaaagttagttacggagttagttactccaaatcactataaataagccacacctatgtactattccatatcttttat 1015735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 4399620 - 4399574
Alignment:
Q  283 gtagaaagttagttagggatttagttactccaaatcactataaataa 329  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||    
T  4399620 gtagaaagttagttagggagttagttactccaactcactataaataa 4399574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 30191518 - 30191564
Alignment:
Q  283 gtagaaagttagttagggatttagttactccaaatcactataaataa 329  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||    
T  30191518 gtagaaagttagttagggatttagttatgccaaatcactataaataa 30191564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 25306663 - 25306724
Alignment:
Q  188 atttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtatagt 250  Q
    |||||||| |||||||||||||||| || | ||||||||||| ||| ||||||||| ||||||    
T  25306663 atttcaaactcaaattggtgaattttcccactttgagtttga-gggaactattagaatatagt 25306724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 48 - 251
Target Start/End: Complemental strand, 35673708 - 35673508
Alignment:
Q  48 ttttggcttggacctcatctttgttgggcttcagcttggcttcctcagcatttactatcagtctttgttttttgctagtttacacccattttacttaggc 147  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||  |||||||||| ||||||||||||| ||||||||||||||||||||||||| |    
T  35673708 ttttggcttggacctcgtctttgttgggcttcagtttggcttcctcgtcatttactattagtctttgttttt-gctagtttacacccattttacttagtc 35673610  T
Q  148 attacaatctagtgagaataaattgtgtatgtttccttacatttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtat 247  Q
    |||||||| |||||||||||||||||  |||| ||||| ||||||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||    
T  35673609 attacaatatagtgagaataaattgt--atgtgtccttgcatttcaaactcaaattggtaaatttccccattttgagtttgagggggactaatagagtat 35673512  T
Q  248 agtg 251  Q
    ||||    
T  35673511 agtg 35673508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 199 - 357
Target Start/End: Original strand, 1174961 - 1175124
Alignment:
Q  199 aaattggtgaatttccctattttgagtttgagggggactattagagtatagtgtagaagataacttggagatcaagttatctatgtagaaagttagttag 298  Q
    ||||||||||||||  | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | |    
T  1174961 aaattggtgaatttttccattttgagtttgaggaggactattagagtatagtgaagaagataacttggagagcaagttatctatgtagaaagttaggtgg 1175060  T
Q  299 ggatttagttactccaaatcactataaata----acacctatgtaatatttca-tatcttttat 357  Q
    ||| ||||||||||||| ||||||||||||    ||||||||||| ||||||| ||||||||||    
T  1175061 ggagttagttactccaagtcactataaataagttacacctatgtactatttcattatcttttat 1175124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 238 - 357
Target Start/End: Complemental strand, 30634449 - 30634325
Alignment:
Q  238 attagagtatagtgtagaagataacttggagatcaagttatctatgtagaaagttagttagggatttagttactccaaatcactataaata----acacc 333  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    |||||    
T  30634449 attagagtatagtgaagaagataacttggagagcaagttatctatgtagaaagttagttagggagttagttactccaagtcactataaataagctacacc 30634350  T
Q  334 tatgtaatatttca-tatcttttat 357  Q
    |||||| ||||||| ||||||||||    
T  30634349 tatgtactatttcattatcttttat 30634325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 9e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 199 - 326
Target Start/End: Complemental strand, 11810023 - 11809896
Alignment:
Q  199 aaattggtgaatttccctattttgagtttgagggggactattagagtatagtgtagaagataacttggagatcaagttatctatgtagaaagttagttag 298  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  11810023 aaattggtgaatttccccattttaagtttgagggggactattagagtatagtgaagaagataacttggagagcaagttatctatgtagaaagttagttag 11809924  T
Q  299 ggatttagttactccaaatcactataaa 326  Q
    ||| ||||||||||||| ||||||||||    
T  11809923 ggagttagttactccaagtcactataaa 11809896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 25054154 - 25054231
Alignment:
Q  188 atttcaaattcaaattggtgaatttcccta-ttttgagtttgagggggactattagagtatagtgtagaagataacttg 265  Q
    |||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| ||||| |||||||    
T  25054154 atttcaaactcaaattggtgaatttccccaattttgagttcgagggggactattagagtatagtg-agaaggtaacttg 25054231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 25054273 - 25054351
Alignment:
Q  283 gtagaaagttagttagggatttagttactccaaatcactataaata----acacctatgtaatatttcatatcttttat 357  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||    ||||||||||| ||||||| |||||||||    
T  25054273 gtagaacgttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttcacatcttttat 25054351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 18807635 - 18807583
Alignment:
Q  199 aaattggtgaatttccctattttgagtttgagggggactattagagtatagtg 251  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  18807635 aaattggtgaattttcccattttgagtttgagggggactattagagtatagtg 18807583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 28395731 - 28395653
Alignment:
Q  283 gtagaaagttagttagggatttagttactccaaatcactataaata----acacctatgtaatatttcatatcttttat 357  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||||    |||||  |||| |||||||||||||||||    
T  28395731 gtagaaaattagttagggagttatttactccaaatcactataaataagctacaccactgtactatttcatatcttttat 28395653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 329
Target Start/End: Complemental strand, 4847860 - 4847817
Alignment:
Q  286 gaaagttagttagggatttagttactccaaatcactataaataa 329  Q
    |||||||||||||||| ||||||||||||| |||||||||||||    
T  4847860 gaaagttagttagggagttagttactccaagtcactataaataa 4847817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 52520502 - 52520537
Alignment:
Q  197 tcaaattggtgaatttccctattttgagtttgaggg 232  Q
    ||||||||||||||||||| ||||||||||||||||    
T  52520502 tcaaattggtgaatttccccattttgagtttgaggg 52520537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 235 - 357
Target Start/End: Complemental strand, 25726031 - 25725904
Alignment:
Q  235 actattagagtatagtgtagaagataacttggagatcaagttatctatgtagaaagttagttagggatttagttactccaaatcactataaata----ac 330  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    ||    
T  25726031 actattagagtatagtgaagaagataacttggagagcaagttatctatgtagaaagttagttagggagttagttactccaagtcactataaataagttac 25725932  T
Q  331 acctatgtaatatttca-tatcttttat 357  Q
    ||||||||| ||||||| ||||||||||    
T  25725931 acctatgtactatttcattatcttttat 25725904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 329
Target Start/End: Complemental strand, 40382978 - 40382886
Alignment:
Q  237 tattagagtatagtgtagaagataacttggagatcaagttatctatgtagaaagttagttagggatttagttactccaaatcactataaataa 329  Q
    ||||||||||||||| |||||||| ||||||||  |||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||    
T  40382978 tattagagtatagtgaagaagatatcttggagagtaagttatctatgtagaaagttagttagggagttaggtactccaagtcactataaataa 40382886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 357
Target Start/End: Original strand, 10412281 - 10412385
Alignment:
Q  256 agataacttggagatcaagttatctatgtagaaagttagttagggatttagttactccaaatcactataaata----acacctatgtaatatttcatatc 351  Q
    |||||||||||||| ||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||    ||||||||||| |||||||||||    
T  10412281 agataacttggagagcaagtaaccta-gtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttcatatc 10412379  T
Q  352 ttttat 357  Q
    ||||||    
T  10412380 ttttat 10412385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 357
Target Start/End: Original strand, 10410708 - 10410812
Alignment:
Q  256 agataacttggagatcaagttatctatgtagaaagttagttagggatttagttactccaaatcactataaata----acacctatgtaatatttcatatc 351  Q
    |||||||||||||| ||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||    ||||||||||| ||||||| |||    
T  10410708 agataacttggagagcaagtaaccta-gtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttcacatc 10410806  T
Q  352 ttttat 357  Q
    ||||||    
T  10410807 ttttat 10410812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 189 - 357
Target Start/End: Complemental strand, 25502295 - 25502121
Alignment:
Q  189 tttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtatagtgtagaagataacttg-gagatcaagt--tatctat-gt 284  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||| | |  |   |||  || |||| ||    
T  25502295 tttcaaactcaaattggtgaatttccccattttgagtttgagggggactattagagtatagtg-agaata-aactagagttacttagtggtaactatagt 25502198  T
Q  285 agaaagttagttagggatttagttactccaaatcactataaata----acacctatgtaatatttcatatcttttat 357  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||    ||| ||||||| |||| ||||||||||||    
T  25502197 agaaagttagttagggagttagttactccaattcactataaataagttacatctatgtactattccatatcttttat 25502121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 4895992 - 4895933
Alignment:
Q  188 atttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtat 247  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4895992 atttcaaactcaaattggtgaatttccccattttgagtttgagggggactattagagtat 4895933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 10412189 - 10412268
Alignment:
Q  188 atttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtatagtgtagaagataacttggag 268  Q
    |||||||| |||||||||| | |||| | ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  10412189 atttcaaactcaaattggtaattttctcaattttgagtttgagggggactattagagtatagtg-agaaggtaatttggag 10412268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 33689805 - 33689863
Alignment:
Q  189 tttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtata 248  Q
    ||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  33689805 tttcaaactcaaattggtgaatttccccattttgagtttga-ggggactattagagtata 33689863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 21637419 - 21637365
Alignment:
Q  197 tcaaattggtgaatttccctattttgagtttgagggggactattagagtatagtg 251  Q
    ||||||||||||||||| | || ||||||||||||||||||||||||||||||||    
T  21637419 tcaaattggtgaatttctcaatcttgagtttgagggggactattagagtatagtg 21637365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 25507113 - 25507034
Alignment:
Q  283 gtagaaagttagttaggga-tttagttactccaaatcactataaata----acacctatgtaatatttcatatcttttat 357  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||||||    ||||||||||| |||| ||||| ||||||    
T  25507113 gtagaaagttacttagggagtttagttactccaattcactataaataagctacacctatgtactattccatattttttat 25507034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 44782406 - 44782279
Alignment:
Q  237 tattagagtatagtgtaga--agataacttggagatcaagttatctatgtagaaagttagttagggatttagttactccaaatcactataaata----ac 330  Q
    ||||||||||||||| |||  ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    ||    
T  44782406 tattagagtatagtgaagagaagataacttagagagcaagttatctatgtagaaagttagttagggagttagttactccaagtcactataaataagctac 44782307  T
Q  331 acctatgtaatatttca-tatcttttat 357  Q
    ||||||||| ||||||| ||||||||||    
T  44782306 acctatgtactatttcattatcttttat 44782279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 329
Target Start/End: Original strand, 46679590 - 46679683
Alignment:
Q  237 tattagagtatagtgtagaagataacttggagatcaagttatctat-gtagaaagttagttagggatttagttactccaaatcactataaataa 329  Q
    ||||||||||||||| |||||||||||||| || ||||  | |||| ||||||| ||||||||||| ||||||||||||| |||||||||||||    
T  46679590 tattagagtatagtgaagaagataacttggggagcaagcaaactatagtagaaaattagttagggagttagttactccaagtcactataaataa 46679683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 3284438 - 3284497
Alignment:
Q  188 atttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtat 247  Q
    |||||||| |||||||||||| ||| || | |||||||||||||||||||||||||||||    
T  3284438 atttcaaactcaaattggtgagttttcccactttgagtttgagggggactattagagtat 3284497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 9311965 - 9312024
Alignment:
Q  188 atttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtat 247  Q
    |||||||| ||||||||||||| ||| | | |||||||||||||||||||||||||||||    
T  9311965 atttcaaactcaaattggtgaaattctccactttgagtttgagggggactattagagtat 9312024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 9217542 - 9217597
Alignment:
Q  256 agataacttggagatcaagttatctatgtagaaagttagttagggatttagttactc 312  Q
    ||||| |||||||| ||||| ||||| ||||||||||||||||||| ||| ||||||    
T  9217542 agatatcttggagagcaagtaatcta-gtagaaagttagttagggagttaattactc 9217597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 35891624 - 35891592
Alignment:
Q  217 attttgagtttgagggggactattagagtatag 249  Q
    |||| ||||||||||||||||||||||||||||    
T  35891624 atttagagtttgagggggactattagagtatag 35891592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 255 - 357
Target Start/End: Original strand, 4602202 - 4602307
Alignment:
Q  255 aagataacttggagatcaagttatctatgtagaaagttagttagggatttagttactccaaatcactataaata----acacctatgtaatatttcatat 350  Q
    ||||||||||||||| ||||| |  || ||||||||||||||||||| ||||||||||||||||||||||||||    ||||||||||| ||||||||||    
T  4602202 aagataacttggagagcaagtaacata-gtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttcatat 4602300  T
Q  351 cttttat 357  Q
    |||||||    
T  4602301 cttttat 4602307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 268
Target Start/End: Original strand, 4608938 - 4609014
Alignment:
Q  191 tcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtatagtgtagaagataacttggag 268  Q
    ||||| ||||||| ||||||||  | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  4608938 tcaaactcaaattagtgaatttttccattttgagtttgagggggactattagagtatagtg-agaaggtaacttggag 4609014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 27682083 - 27682173
Alignment:
Q  236 ctattagagtatagtgtagaagataacttggagatcaagttatctatgtagaaagttagttagggatttagttactccaaatcactataaataa 329  Q
    |||||||||||||||| ||| ||||||||||||| ||||  ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||    
T  27682083 ctattagagtatagtg-aga-gataacttggagagcaagcaatcta-gtataaagttagttagggagttagttactccaaatcacaataaataa 27682173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 4609061 - 4609119
Alignment:
Q  303 ttagttactccaaatcactataaata----acacctatgtaatatttcatatcttttat 357  Q
    ||||||||||||||||||||||||||    ||||||||||| |||||||||||||||||    
T  4609061 ttagttactccaaatcactataaataagctacacctatgtactatttcatatcttttat 4609119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 28133655 - 28133723
Alignment:
Q  283 gtagaaagttagttagggatttagttactccaaatcactataaata----acacctatgtaatatttca 347  Q
    |||||||||||||||| || ||||||||||||| ||||||||||||    ||||||||||| |||||||    
T  28133655 gtagaaagttagttagagagttagttactccaagtcactataaataagctacacctatgtactatttca 28133723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 9032985 - 9032939
Alignment:
Q  202 ttggtgaatttccctattttgagtttgagggggactattagagtata 248  Q
    |||||||||||| | |||||||||||||||| |||||||||||||||    
T  9032985 ttggtgaatttctccattttgagtttgagggagactattagagtata 9032939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 26667279 - 26667219
Alignment:
Q  189 tttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtatagtg 251  Q
    ||||||| ||||||||||||||||  | |  |||||||||||||||||||||| |||||||||    
T  26667279 tttcaaactcaaattggtgaatttttcca--ttgagtttgagggggactattacagtatagtg 26667219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 24544664 - 24544742
Alignment:
Q  283 gtagaaagttagttagggatttagttactccaaatcactataaata----acacctatgtaatatttcatatcttttat 357  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    ||||||||||| |||||||||||||||||    
T  24544664 gtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttcatatcttttat 24544742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 15868329 - 15868387
Alignment:
Q  189 tttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtat 247  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15868329 tttcaaactcaaattggtgaatttccccattttgagtttgagggggactattagagtat 15868387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 33869183 - 33869241
Alignment:
Q  189 tttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtat 247  Q
    ||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||    
T  33869183 tttcaaactcaaattggtgaattttcccattttgagtttgagggggactattagagtat 33869241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 14620447 - 14620506
Alignment:
Q  188 atttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtat 247  Q
    |||||||| ||||||||||||||||||| ||||| | |||||||||||||||||||||||    
T  14620447 atttcaaactcaaattggtgaatttccccattttaaatttgagggggactattagagtat 14620506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 34350509 - 34350430
Alignment:
Q  283 gtagaaagttagttagggatttagttactccaaatcactataaata----acacctatgtaatatttca-tatcttttat 357  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||    ||||||||||| ||||||| ||||||||||    
T  34350509 gtagaaagttagttagggagttagttactccaaatcattataaataaactacacctatgtactatttcactatcttttat 34350430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 19645633 - 19645593
Alignment:
Q  192 caaattcaaattggtgaatttccctattttgagtttgaggg 232  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  19645633 caaactcaaattggtgaatttccccattttgagtttgaggg 19645593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 5378633 - 5378668
Alignment:
Q  197 tcaaattggtgaatttccctattttgagtttgaggg 232  Q
    ||||||||||||||||||| ||||||||||||||||    
T  5378633 tcaaattggtgaatttccccattttgagtttgaggg 5378668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 21631513 - 21631451
Alignment:
Q  189 tttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtatagtg 251  Q
    ||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  21631513 tttcaaactcaaattggtgaattttcccattttgagtttgagggggactattagagtatagtg 21631451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 29924536 - 29924598
Alignment:
Q  236 ctattagagtatagtgtagaagataactt-ggagatcaagttatctatgtagaaagttagtta 297  Q
    |||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||    
T  29924536 ctattagagtatagtgaagaagataactttggagagcaagttatctatgtagaaagttagtta 29924598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 9878428 - 9878368
Alignment:
Q  191 tcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtatagtg 251  Q
    |||||||||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||    
T  9878428 tcaaattcaaattgatgagtttccccattttgagtttgaggaggactattagagtatagtg 9878368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 964997 - 965057
Alignment:
Q  256 agataacttggagatcaagttatctatgtagaaagttagttagggatttagttactccaaat 317  Q
    |||||||||||||| ||||| || || ||||||||||||||||||| |||||||||||||||    
T  964997 agataacttggagagcaagtaatata-gtagaaagttagttagggagttagttactccaaat 965057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 21464441 - 21464487
Alignment:
Q  283 gtagaaagttagttagggatttagttactccaaatcactataaataa 329  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||    
T  21464441 gtagaaagttagttagggggttagttactccaaatcactgtaaataa 21464487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 28124918 - 28124883
Alignment:
Q  197 tcaaattggtgaatttccctattttgagtttgaggg 232  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28124918 tcaaattggtgaatttccccattttgagtttgaggg 28124883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 6162 - 6221
Alignment:
Q  188 atttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtat 247  Q
    |||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  6162 atttcaaactcaaattggtgattttccccattttgagtttgagggggactattagagtat 6221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 9252 - 9189
Alignment:
Q  188 atttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtatagtg 251  Q
    |||||||| ||||||||||||||||| | || |||||||||||| |||||||||||||||||||    
T  9252 atttcaaactcaaattggtgaatttctcaatcttgagtttgaggaggactattagagtatagtg 9189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 11035 - 11095
Alignment:
Q  188 atttcaaattcaaattggtgaatttccctattttgagtttgagggggactattagagtata 248  Q
    |||||||| |||||||||||||||| || | ||||||||||| ||||||||||||||||||    
T  11035 atttcaaactcaaattggtgaattttcccactttgagtttgaaggggactattagagtata 11095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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