View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9901_low_11 (Length: 356)

Name: NF9901_low_11
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9901_low_11
NF9901_low_11
[»] chr8 (1 HSPs)
chr8 (237-337)||(6524578-6524681)
[»] chr1 (2 HSPs)
chr1 (118-212)||(29321939-29322032)
chr1 (118-160)||(14106850-14106892)
[»] chr5 (1 HSPs)
chr5 (118-212)||(22362729-22362823)
[»] chr4 (2 HSPs)
chr4 (118-212)||(1493978-1494072)
chr4 (155-212)||(12105402-12105459)
[»] chr2 (2 HSPs)
chr2 (118-212)||(17641381-17641475)
chr2 (118-212)||(27008429-27008523)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 6524681 - 6524578
Alignment:
Q  237 tggtcacaaacttctacagcttcaaacctgtagaagttattgt--caagtaagttctgctgccatc-ttttttggccctccaccatgaggtctttcacaa 333  Q
    ||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6524681 tggtcacaaacttctacagcttcaaacctgtagaagttattattgtaagtaagttctgctgccatctttttttggccctccaccatgaggtctttcacaa 6524582  T
Q  334 ttct 337  Q
    ||||    
T  6524581 ttct 6524578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 29322032 - 29321939
Alignment:
Q  118 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 212  Q
    ||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||| | ||||| | |||||||||||||    
T  29322032 aaattataaaatgtgtgaaattact-aaatgcccataccacatcagcagtggtagaaaggggtgtatagaaagagtggtttgtgtatctttttcc 29321939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 14106850 - 14106892
Alignment:
Q  118 aaattataaaatgtgtgaaattactgaaatgctcataccacat 160  Q
    ||||||||||||||||||||||||| |||||| ||||||||||    
T  14106850 aaattataaaatgtgtgaaattactaaaatgcccataccacat 14106892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 22362823 - 22362729
Alignment:
Q  118 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 212  Q
    ||||||||||||||||||||||||  |||||| |||||||||| |  ||||||| |||| ||||||||||| | |||||||||||||||||||||    
T  22362823 aaattataaaatgtgtgaaattacgaaaatgcccataccacatcattagtggtacaaaatggtgtatagaaagagtggtctatgtatctttttcc 22362729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 1493978 - 1494072
Alignment:
Q  118 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 212  Q
    |||||||||||||||||||| |||| |||||| |||||||||| | |||||||| |||||||||||||||| | ||||| | |||||||||||||    
T  1493978 aaattataaaatgtgtgaaactactaaaatgcccataccacatcatcagtggtacaaaagggtgtatagaaagagtggtttgtgtatctttttcc 1494072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 12105402 - 12105459
Alignment:
Q  155 ccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 212  Q
    |||||| |||||||||| |||||||||||   || |||||||||||||||||||||||    
T  12105402 ccacatcagcagtggtataaaagggtgtaccaaaagggtggtctatgtatctttttcc 12105459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 17641475 - 17641381
Alignment:
Q  118 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 212  Q
    ||||||||||||||||||||||||| |||||| |||||||||| |  ||||||  ||| |||||||||||| | |||||||||||||||||||||    
T  17641475 aaattataaaatgtgtgaaattactaaaatgcccataccacattattagtggtgcaaaggggtgtatagaaagagtggtctatgtatctttttcc 17641381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 27008429 - 27008523
Alignment:
Q  118 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 212  Q
    |||||||||||||||||||| |||| |||||| |||||||||| | |||||||| |||||||||||||||| | ||||| | |||||||||||||    
T  27008429 aaattataaaatgtgtgaaactactaaaatgcccataccacatcatcagtggtacaaaagggtgtatagaaagagtggtttgtgtatctttttcc 27008523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University