View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9901_low_13 (Length: 337)
Name: NF9901_low_13
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9901_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 6 - 321
Target Start/End: Original strand, 32845116 - 32845431
Alignment:
| Q |
6 |
gtttcgtgtttgtcttattccgtcaacagtgtagacaaagggtttatgctccaggatggcgacaaaatttcaacacaagagaatttgctgaactctacaa |
105 |
Q |
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| T |
32845116 |
gtttcgtgtttgtcttattccgtcaacagtgtagacaaagggtttatgctccaggatggcgacaaaatttcaacacaagagaatttgctgaactctacaa |
32845215 |
T |
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| Q |
106 |
tcttggatcacctgttgctgctgtcttcttcaattgtcagagggagagtggctctggaggaagaacctttagataattattatatgaactatatgaaatt |
205 |
Q |
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| T |
32845216 |
tcttggatcacctgttgctgctgtcttcttcaattgtcagagggagagtggctctggaggaagaacctttagataattattatatgaactatatgaaatt |
32845315 |
T |
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| Q |
206 |
aaaattaaagtggaagcttagtgttggtttggtatcacaaagactttgacaaaatcaccatgagtcatattcaacaaaatcattgtagcatagtgatttt |
305 |
Q |
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| T |
32845316 |
aaaattaaagtggaagcttagtgttagtttggtatcacaaagactttgacaaaatcaccatgagtcatattcaacaaaatcattgtaccatagtgatttt |
32845415 |
T |
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| Q |
306 |
gccaagacattgtaat |
321 |
Q |
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| T |
32845416 |
gccaagacattgtaat |
32845431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 32865618 - 32865791
Alignment:
| Q |
6 |
gtttcgtgtttgtcttattccgtcaacagtgtagacaaagggtttatgctccaggatggcgacaaaatttcaacacaagagaatttgctgaactctacaa |
105 |
Q |
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| T |
32865618 |
gtttcgtgtttgtattattgcatcaacagtgtagacaaagagtctatgctccgggatggcgacaaaatttcaatacaagagaattcattgaattttacaa |
32865717 |
T |
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| Q |
106 |
tcttggatcacctgttgctgctgtcttcttcaattgtcagagggagagtggctctggaggaagaacctttagat |
179 |
Q |
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| T |
32865718 |
tcttggatcgccggttgctgctgtcttcttcaattgtcaaagggaaactggttctgggggaagaacctttagat |
32865791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 774641 - 774550
Alignment:
| Q |
53 |
gctccaggatggcgacaaaatttcaacacaagagaatttgctgaactctacaatcttggatcacctgttgctgctgtcttcttcaattgtca |
144 |
Q |
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| T |
774641 |
gctcctggatggagacaaaatttcattacaagagattttgctgaattttacaatcttggattacctgttgctgctctctatttcaattgtca |
774550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 814574 - 814483
Alignment:
| Q |
53 |
gctccaggatggcgacaaaatttcaacacaagagaatttgctgaactctacaatcttggatcacctgttgctgctgtcttcttcaattgtca |
144 |
Q |
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| T |
814574 |
gctcctggatggagacaaaatttcattacaagagattttgctgaattttacaatcttggattacctgttgctgctctctatttcaattgtca |
814483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 10370121 - 10370039
Alignment:
| Q |
46 |
ggtttatgctccaggatggcgacaaaatttcaacacaagagaatttgctgaactctacaatcttggatcacctgttgctgctg |
128 |
Q |
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| T |
10370121 |
ggtttatgctccaggttggcgacagaatttcaacactagagaatttgcagaactttacaatttgggattgccagttgctgctg |
10370039 |
T |
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