View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9901_low_19 (Length: 257)
Name: NF9901_low_19
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9901_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 42028064 - 42028178
Alignment:
| Q |
139 |
tgctgtcatatgccaagagaatggcctagttcctatagtggagcccgaaatcctagtggatggatctcatgacatcaacaagtgtgctgaggtgactgaa |
238 |
Q |
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| T |
42028064 |
tgctgtcatatgccaagagaatggcctagttcctatagtggagcccgaaatcctagtggatggatctcatgacatcaacaagtgtgctgaggtgactgaa |
42028163 |
T |
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| Q |
239 |
cgtgttctggctgcg |
253 |
Q |
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| T |
42028164 |
cgtgttctggctgcg |
42028178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 42028038 - 42028070
Alignment:
| Q |
38 |
gctggtgcccgatttgccaagtggcgtgctgtc |
70 |
Q |
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| T |
42028038 |
gctggtgcccgatttgccaagtggcgtgctgtc |
42028070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 227
Target Start/End: Complemental strand, 29233833 - 29233644
Alignment:
| Q |
38 |
gctggtgcccgatttgccaagtggcgtgctgtcctcaagattggtcccaacgagccatctgagctggctatccacgagaacgcctatggtctagctcgct |
137 |
Q |
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| T |
29233833 |
gctggtgcacgtttcgctaaatggcgtgcagtgcttaaaatcggccccaatgagccatctgagcactctatccacgagaatgcctatggtttggcccgat |
29233734 |
T |
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| Q |
138 |
atgctgtcatatgccaagagaatggcctagttcctatagtggagcccgaaatcctagtggatggatctcatgacatcaacaagtgtgctg |
227 |
Q |
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| T |
29233733 |
atgcagtcatatgccaagagaatggacttgtaccaattgttgagcctgagatccttgttgatggacctcatgacattcaaaagtgtgctg |
29233644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 227
Target Start/End: Complemental strand, 29237583 - 29237394
Alignment:
| Q |
38 |
gctggtgcccgatttgccaagtggcgtgctgtcctcaagattggtcccaacgagccatctgagctggctatccacgagaacgcctatggtctagctcgct |
137 |
Q |
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| T |
29237583 |
gctggtgcacgtttcgctaaatggcgtgcagtgcttaaaatcggccccaatgagccatctgagcactctatccacgagaatgcctatggtttggcccgat |
29237484 |
T |
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| Q |
138 |
atgctgtcatatgccaagagaatggcctagttcctatagtggagcccgaaatcctagtggatggatctcatgacatcaacaagtgtgctg |
227 |
Q |
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| T |
29237483 |
atgcagtcatatgccaagagaatggacttgtaccaattgttgagcctgagatccttgttgatggacctcatgacattcaaaagtgtgctg |
29237394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 42280343 - 42280404
Alignment:
| Q |
50 |
tttgccaagtggcgtgctgtcctcaagattggtcccaacgagccatctgagctggctatcca |
111 |
Q |
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| T |
42280343 |
tttgccaagtggcgtgcggtcctcaagattggtcccaatgagccctctgagttgtctatcca |
42280404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 26629932 - 26629837
Alignment:
| Q |
107 |
atccacgagaacgcctatggtctagctcgctatgctgtcatatgccaagagaatggcctagttcctatagtggagcccgaaatcctagtggatgga |
202 |
Q |
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| T |
26629932 |
atccacgaaaacgcctatggtttagctcgttacgccgtcatatgtcaagagaatggtttggttccaattgtggagcctgagattctagtggatgga |
26629837 |
T |
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