View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9901_low_2 (Length: 466)
Name: NF9901_low_2
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9901_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 21 - 453
Target Start/End: Original strand, 50229003 - 50229435
Alignment:
| Q |
21 |
actgggttcacaaaacaatacccaaccaccgacaaacgccattccaaacattactaaaaacttcacaacctnnnnnnntatccttaattgtttcctcctt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50229003 |
actgggttcacaaaacaatacccaaccaccgacaaacgccattccaaacattactaaaaacttcacaacctaaaaaaatatccttaattgtttcctcctt |
50229102 |
T |
|
| Q |
121 |
cccaccccctcccgggcaaagcaaagaagtagcaggcaccactccacgttgaaaaaagaagatccttagtaggaatccttttgttcaagagcctccatat |
220 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50229103 |
cccaccccctcccgggcaaagcaaagaagtagcaagcaccactccatgttgaaaaaagaagatccttagtaggaatccttttgttcaagagcctccatat |
50229202 |
T |
|
| Q |
221 |
ataatgatatcttcatagtttagttttgttccaaaccaaatgagnnnnnnntatctaagttgggttgatcacatgcttatgagtttgataagcatctttg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50229203 |
ataatgatatcttcatagtttagttttgttccaaaccaaatgagaaaaaaatatctaagttgggttgatcacatgcttatgagtttgataagcatctttg |
50229302 |
T |
|
| Q |
321 |
actgaatatccgttagacagattaagtaaccaaagtcatcaatcaaccatgttaacctgtnnnnnnngccgcctcctaagtaaaaagacgccttctccac |
420 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50229303 |
actgaatatccgttagacagactaagtaaccaaagtcatcaatcaaccatgttaacctgtaaaaaaagccgcctcctaagtaaaaagacgccttctccac |
50229402 |
T |
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| Q |
421 |
ctctgcacatccactccccaccctcacctatgc |
453 |
Q |
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| T |
50229403 |
ctctgcacatccactccccaccctcacctatgc |
50229435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 39380748 - 39380885
Alignment:
| Q |
37 |
aatacccaaccaccgacaaacgccattccaaacattactaaaaacttcacaacctnnnnnnntatccttaattgtttcctccttcccaccccctcccggg |
136 |
Q |
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|||||||||||| ||| |||| ||||||||||||||||||||||| ||||| | | | ||| |||||||||||||||||| |||||| | |
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| T |
39380748 |
aatacccaaccatcgaaaaacaccattccaaacattactaaaaacatcacatcttaattaaagacaattagttgtttcctccttcccacaccctcctgaa |
39380847 |
T |
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| Q |
137 |
caaagcaaagaagtagcaggcaccactccacgttgaaa |
174 |
Q |
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|||| |||||||||| |||||| ||||||||| ||||| |
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| T |
39380848 |
caaaacaaagaagtatcaggcaacactccacggtgaaa |
39380885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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