View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9901_low_22 (Length: 246)

Name: NF9901_low_22
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9901_low_22
NF9901_low_22
[»] chr5 (7 HSPs)
chr5 (102-243)||(12560148-12560291)
chr5 (105-243)||(9211370-9211509)
chr5 (102-243)||(19242372-19242514)
chr5 (105-243)||(9369976-9370115)
chr5 (133-243)||(12556905-12557016)
chr5 (106-208)||(35182045-35182148)
chr5 (106-243)||(38783833-38783971)
[»] chr1 (3 HSPs)
chr1 (102-243)||(35923247-35923389)
chr1 (106-243)||(1466784-1466922)
chr1 (106-243)||(5050501-5050639)
[»] chr7 (7 HSPs)
chr7 (106-243)||(19538755-19538893)
chr7 (106-243)||(19545406-19545544)
chr7 (112-243)||(47228540-47228672)
chr7 (140-243)||(47465706-47465810)
chr7 (136-243)||(19549755-19549864)
chr7 (136-243)||(19554968-19555076)
chr7 (183-241)||(19551971-19552029)
[»] chr3 (7 HSPs)
chr3 (103-241)||(26640729-26640868)
chr3 (106-243)||(9450711-9450849)
chr3 (106-243)||(17724560-17724698)
chr3 (106-243)||(19025789-19025927)
chr3 (106-243)||(28838383-28838521)
chr3 (107-243)||(20798757-20798893)
chr3 (102-243)||(28830414-28830556)
[»] chr8 (4 HSPs)
chr8 (124-237)||(3427899-3428013)
chr8 (102-243)||(9937293-9937435)
chr8 (107-243)||(9939665-9939802)
chr8 (113-235)||(9945721-9945847)
[»] chr2 (2 HSPs)
chr2 (102-175)||(7959611-7959684)
chr2 (135-238)||(43923991-43924084)
[»] chr4 (1 HSPs)
chr4 (105-237)||(44089700-44089833)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 102 - 243
Target Start/End: Complemental strand, 12560291 - 12560148
Alignment:
Q  102 ggaaggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttggg-tagaccttaggctagcaccc-tccaaagtgcaat 199  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  12560291 ggaaggggctgcgcgaacgcaaacccccacggcaacaaattatgatgtaggctccaccacttggggtagaccttaggctagcacccctccaaagtgcaat 12560192  T
Q  200 ggaggtcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12560191 ggaggtcacttgcctaggccatgggccttcttgatcacccattg 12560148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 9211370 - 9211509
Alignment:
Q  105 aggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagcacc-ctccaaagtgcaatggag 203  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||    
T  9211370 aggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagcacctcttcaaagtgcaatgaag 9211469  T
Q  204 gtcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  9211470 gtcacttgcctaggccatgggccttcctgatcacccattg 9211509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 19242372 - 19242514
Alignment:
Q  102 ggaaggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatg 200  Q
    ||||||||| ||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||    
T  19242372 ggaaggggccgcgcgaacgcaggcccccgctgcaacaaattatgatgtaggctccaccacttgggtagaccttagactagcacccctcctaagtgcaatg 19242471  T
Q  201 gaggtcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19242472 gaggtcacttgcctaggccatgggccttcttgatcacccattg 19242514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 105 - 243
Target Start/End: Complemental strand, 9370115 - 9369976
Alignment:
Q  105 aggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggag 203  Q
    |||||| ||||||||||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||    
T  9370115 aggggccgcgcgaacgcaagccccaaccacaacatattatgatgtaggctccaccacttgggtagaccttaggctagcaccccttcaaagtgcaatgaag 9370016  T
Q  204 gtcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  9370015 gtcacttgcctaggccatgggcctttttgatcacccattg 9369976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 12557016 - 12556905
Alignment:
Q  133 gcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggaggtcacttgcctaggccatgggccttctt 231  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| |  | ||||| ||| ||||||||    
T  12557016 gcaacaaattatgatgtaggctccaccacttgagtagaccttaggccagcacccctccaaagtgcaatggaggtcattgtcttaggctatgagccttctt 12556917  T
Q  232 gatcacccattg 243  Q
    ||||||| ||||    
T  12556916 gatcacctattg 12556905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 35182148 - 35182045
Alignment:
Q  106 ggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggagg 204  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||   | ||||| | | ||||||| |||||| |||||||||||||||||||||    
T  35182148 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctgttctacttgagaacaccttagactagcacccctccaaagtgcaatggagg 35182049  T
Q  205 tcac 208  Q
    ||||    
T  35182048 tcac 35182045  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 38783971 - 38783833
Alignment:
Q  106 ggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggagg 204  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||   | ||||| | | |||||| |   ||| |||||| ||||||||||||||    
T  38783971 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctgttctacttgagaacaccttaagtaggcacccctcctaagtgcaatggagg 38783872  T
Q  205 tcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    ||||   |||||||||||| |||||||||||| ||||||    
T  38783871 tcaccaacctaggccatggaccttcttgatcatccattg 38783833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 102 - 243
Target Start/End: Complemental strand, 35923389 - 35923247
Alignment:
Q  102 ggaaggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatg 200  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||    
T  35923389 ggaaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggcaagcacccctcctaagtgcaatg 35923290  T
Q  201 gaggtcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  35923289 gaggtcacttgcctaggccatgggccttcatgatcacccattg 35923247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 1466922 - 1466784
Alignment:
Q  106 ggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggagg 204  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||| |||||| |||||||||||| |    
T  1466922 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttagaaaggcacccctcctaagtgcaatggaag 1466823  T
Q  205 tcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    |||| |  |||||||||||||||||||||||||||||||    
T  1466822 tcacctttctaggccatgggccttcttgatcacccattg 1466784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 5050501 - 5050639
Alignment:
Q  106 ggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggagg 204  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| |   | ||||| | | ||||||||| |||| |||||| ||||||||||||||    
T  5050501 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggttgttctacttgagaacaccttaggcgagcacccctcctaagtgcaatggagg 5050600  T
Q  205 tcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    ||||   |||||||||||| |||| ||||||| ||||||    
T  5050601 tcaccaacctaggccatggacctttttgatcatccattg 5050639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 19538755 - 19538893
Alignment:
Q  106 ggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggagg 204  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  19538755 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttaggtagaccttaggatagcacccctccaaagtgcaatggagg 19538854  T
Q  205 tcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  19538855 tcactttcctaggccatgggccttcgtgatcacccattg 19538893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 19545406 - 19545544
Alignment:
Q  106 ggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggagg 204  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||    
T  19545406 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttagaagagcacccctccaaagtgcaatggagg 19545505  T
Q  205 tcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    ||||||  ||||||||| ||||||| |||||||||||||    
T  19545506 tcacttttctaggccataggccttcatgatcacccattg 19545544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 47228672 - 47228540
Alignment:
Q  112 gcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggaggtcactt 210  Q
    |||||||||||  ||||| |||||||||||||| |||||||||||||||||||| ||||||||||   | || |||||| |||||||||||||||||| |    
T  47228672 gcgcgaacgcagaccccctcagcaacaaattataatgtaggctccaccacttggatagaccttagaaaaacacccctcctaagtgcaatggaggtcacct 47228573  T
Q  211 gcctaggccatgggccttcttgatcacccattg 243  Q
      ||||||||| ||||||| |||||||||||||    
T  47228572 ttctaggccataggccttcatgatcacccattg 47228540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 47465706 - 47465810
Alignment:
Q  140 attatgatgtaggctccaccacttgggtagaccttaggctagcaccc-tccaaagtgcaatggaggtcacttgcctaggccatgggccttcttgatcacc 238  Q
    ||||||||||||||||||||||||| |||||||||||   ||||||| ||| |||||||||||||| ||| |  ||||||||||||||||| ||||||||    
T  47465706 attatgatgtaggctccaccacttgagtagaccttagaaaagcacccctcccaagtgcaatggaggccacctttctaggccatgggccttcatgatcacc 47465805  T
Q  239 cattg 243  Q
    |||||    
T  47465806 cattg 47465810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 243
Target Start/End: Original strand, 19549755 - 19549864
Alignment:
Q  136 acaaattatgatgtagg-ctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggaggtcacttgcctaggccatgggccttcttga 233  Q
    ||||||||||| ||||| |||||||||||||||   |||||| | |||| |||||| |||||||||||| |||||| | ||||| |||||||||| ||||    
T  19549755 acaaattatgacgtaggtctccaccacttgggtgagccttagacaagcaaccctcctaagtgcaatggaagtcactcgtctaggtcatgggccttattga 19549854  T
Q  234 tcacccattg 243  Q
    ||||||||||    
T  19549855 tcacccattg 19549864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 243
Target Start/End: Original strand, 19554968 - 19555076
Alignment:
Q  136 acaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggaggtcacttgcctaggccatgggccttcttgat 234  Q
    ||||||||||| |||||| ||||||||||||| | |||||| | |||| |||||| ||||||||||||||| ||| | ||||| ||||| |||| |||||    
T  19554968 acaaattatgacgtaggcaccaccacttgggtgggccttagaccagcaaccctcctaagtgcaatggaggttactcgtctaggtcatggacctttttgat 19555067  T
Q  235 cacccattg 243  Q
    || ||||||    
T  19555068 catccattg 19555076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 19551971 - 19552029
Alignment:
Q  183 accctccaaagtgcaatggaggtcacttgcctaggccatgggccttcttgatcacccat 241  Q
    ||||||| ||||||||||||||||||| | ||||| |||||||||||||||||||||||    
T  19551971 accctcctaagtgcaatggaggtcactcgtctaggtcatgggccttcttgatcacccat 19552029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 103 - 241
Target Start/End: Complemental strand, 26640868 - 26640729
Alignment:
Q  103 gaaggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatgg 201  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||    
T  26640868 gaaggggccgcgcgaacgcaggcccccactgcaacaaattatgatgtaggttccaccacttgggtagaccttagactagcacccctcctaagtgcaatgg 26640769  T
Q  202 aggtcacttgcctaggccatgggccttcttgatcacccat 241  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  26640768 aggtcacttgtctaggccatgggccttcttgatcacccat 26640729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 9450849 - 9450711
Alignment:
Q  106 ggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggagg 204  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||    
T  9450849 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggaaggcacccctccaaagtgcaatggagg 9450750  T
Q  205 tcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    |||| | ||||||||||||||||||||||||||||||||    
T  9450749 tcaccttcctaggccatgggccttcttgatcacccattg 9450711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 17724698 - 17724560
Alignment:
Q  106 ggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggagg 204  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||| | ||||||||||||    
T  17724698 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggaaggcacccctcctatgtgcaatggagg 17724599  T
Q  205 tcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    |||| | ||||||||||||||||||||||||||||||||    
T  17724598 tcaccttcctaggccatgggccttcttgatcacccattg 17724560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 19025927 - 19025789
Alignment:
Q  106 ggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggagg 204  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||| | ||||||||||||    
T  19025927 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggaaggcacccctcctatgtgcaatggagg 19025828  T
Q  205 tcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    |||| | ||||||||||||||||||||||||||||||||    
T  19025827 tcaccttcctaggccatgggccttcttgatcacccattg 19025789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 28838383 - 28838521
Alignment:
Q  106 ggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggagg 204  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||| |||||| ||||||||||||||    
T  28838383 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttagaaaggcacccctcctaagtgcaatggagg 28838482  T
Q  205 tcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    |||| | ||||||||||||||||||||||||||||||||    
T  28838483 tcaccttcctaggccatgggccttcttgatcacccattg 28838521  T

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Target: chr3; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 107 - 243
Target Start/End: Original strand, 20798757 - 20798893
Alignment:
Q  107 gggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagcacc-ctccaaagtgcaatggaggt 205  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  20798757 gggctgcgcgaacgcaagccccg-ctgcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagcacctttcctaagtgcaatggaggt 20798855  T
Q  206 cacttgcctaggccatgggccttcttgatcacccattg 243  Q
    |||||||||||||||||  | |||||||||||||||||    
T  20798856 cacttgcctaggccatgaacattcttgatcacccattg 20798893  T

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Target: chr3; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 28830414 - 28830556
Alignment:
Q  102 ggaaggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatg 200  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||   |||| |||||| ||||||||||    
T  28830414 ggaaggggccgcgcgaacgcaggcccccacaacaacaaattatgatgtaggctccaccacttgggtagaccttagaaaagcacccctcctaagtgcaatg 28830513  T
Q  201 gaggtcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    |||||||| |  ||||||||||| |||||||||||| ||||||    
T  28830514 gaggtcacctttctaggccatggaccttcttgatcatccattg 28830556  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 3427899 - 3428013
Alignment:
Q  124 gcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggaggtcacttgcctaggccatg 222  Q
    ||||| || ||||||||||| ||||||  |||||||||||||| |||||||| ||||||| |||||||| ||||||||||||||||  |||||| | |||    
T  3427899 gcccctactgcaacaaattacgatgtaaactccaccacttgggcagaccttaagctagcacccctccaaggtgcaatggaggtcacacgcctagacgatg 3427998  T
Q  223 ggccttcttgatcac 237  Q
    |||||||||||||||    
T  3427999 ggccttcttgatcac 3428013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 243
Target Start/End: Complemental strand, 9937435 - 9937293
Alignment:
Q  102 ggaaggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatg 200  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||   | ||||| | | |||||||    ||| |||||| ||||||||||    
T  9937435 ggaaggggccgcgcgaacgcaggcccccacagcaacaaactatgatgtaggctgttctacttgagaacaccttagataggcacccctccgaagtgcaatg 9937336  T
Q  201 gaggtcacttgcctaggccatgggccttcttgatcacccattg 243  Q
    ||||||||   |||||||||||| ||||| |||||| ||||||    
T  9937335 gaggtcaccaacctaggccatggaccttcatgatcatccattg 9937293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 243
Target Start/End: Complemental strand, 9939802 - 9939665
Alignment:
Q  107 gggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggaggt 205  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| |   | ||||| | | ||||||||   ||| ||||||||||||||||||||||    
T  9939802 gggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggttgttctacttgagaacaccttaggtaggcacccctccaaagtgcaatggaggt 9939703  T
Q  206 cacttgcctaggccatgggccttcttgatcacccattg 243  Q
    |||   |||||||||| | ||||| |||||| ||||||    
T  9939702 caccaacctaggccatagaccttcatgatcatccattg 9939665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 9945847 - 9945721
Alignment:
Q  113 cgcgaacgcaagcccccacagcaacaaattatgatgtaggctcc---accacttgggtagaccttaggctagca-ccctccaaagtgcaatggaggtcac 208  Q
    |||||||||| ||||||||||||||||||||| ||||||||| |    | ||||| | | |||||||||   || |||||||||||||||||||||||||    
T  9945847 cgcgaacgcaggcccccacagcaacaaattataatgtaggctgctgttctacttgagaacaccttaggcagacacccctccaaagtgcaatggaggtcac 9945748  T
Q  209 ttgcctaggccatgggccttcttgatc 235  Q
       |||||||||| | ||||| |||||    
T  9945747 caacctaggccatagaccttcatgatc 9945721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 7959611 - 7959684
Alignment:
Q  102 ggaaggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagacctta 175  Q
    ||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  7959611 ggaaggggccgcgcgaacgcagacccccacagcaacaaattatgatgtaggctccaccatttggatagacctta 7959684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 43923991 - 43924084
Alignment:
Q  135 aacaaattatgatgtaggctccaccacttgggtagaccttaggctagcaccctccaaagtgcaatggaggtcacttgcctaggccatgggccttcttgat 234  Q
    |||||||||| ||||||||||||||||||| ||||||||||  |||| ||||          |||| |||||||||||||||||||||||||||||||||    
T  43923991 aacaaattataatgtaggctccaccacttgagtagaccttaaactagaaccc----------aatgaaggtcacttgcctaggccatgggccttcttgat 43924080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 237
Target Start/End: Complemental strand, 44089833 - 44089700
Alignment:
Q  105 aggggctgcgcgaacgcaagcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggctagca-ccctccaaagtgcaatggag 203  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||||| ||   | ||||| | | |||||||    ||| ||||||||||||||||||||    
T  44089833 aggggccgcgcgaacgcaggccccctcagcaacaaattatgatgtagactgttctacttgagaacaccttagataggcacccctccaaagtgcaatggag 44089734  T
Q  204 gtcacttgcctaggccatgggccttcttgatcac 237  Q
    |||||   ||||||||||| |||||| |||||||    
T  44089733 gtcaccaacctaggccatgagccttcatgatcac 44089700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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