View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9901_low_28 (Length: 232)
Name: NF9901_low_28
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9901_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 31101691 - 31101489
Alignment:
| Q |
16 |
cagaaaggttattcatataaagtgcaagtacatccaaattaatcaagttttgtactgaatcagggattgaaccagaaagactcatgttaaaaaggtagat |
115 |
Q |
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| T |
31101691 |
cagaaaggttattcatataaagtgcaagtacatccaaattaatcaagttttgtactgaatcagggattgaaccagaaagactcatgttataaaggtagat |
31101592 |
T |
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| Q |
116 |
caaggtcaagctagacatgttccacaaggagtgaggaattggtccatacaacttggtgttattagcaaggatgagttgatttaatttgctcatgttccct |
215 |
Q |
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| T |
31101591 |
caaggtcaagctagacatgttccacaaggagtgaggaattggtccatacaacttggtgttattagcaaacatgagttgatttaatttgctcatgttccct |
31101492 |
T |
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| Q |
216 |
atg |
218 |
Q |
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||| |
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| T |
31101491 |
atg |
31101489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 31139049 - 31138866
Alignment:
| Q |
35 |
aagtgcaagtacatccaaattaatcaagttttgtactgaatcagggattgaaccagaaagactcatgttaaaaaggtagatcaaggtcaagctagacatg |
134 |
Q |
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| T |
31139049 |
aagtgcaagctcattcacattaatcaagttttcgacagattcagggattgaaccagaaagactcatgttaaaaaggtagatcaaggtcaagctagacatg |
31138950 |
T |
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| Q |
135 |
ttccacaaggagtgaggaattggtccatacaacttggtgttattagcaaggatgagttgatttaatttgctcatgttccctatg |
218 |
Q |
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| T |
31138949 |
ttccacaaggagtgaggaattggtccatacaacttggtgtttttagcaaggtagagtttatttaatttgctcatgttccctatg |
31138866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 31057256 - 31057054
Alignment:
| Q |
16 |
cagaaaggttattcatataaagtgcaagtacatccaaattaatcaagttttgtactgaatcagggattgaaccagaaagactcatgttaaaaaggtagat |
115 |
Q |
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||||||||| ||| |||| |||||||||| | | |||||||| ||||||||||| ||||||||||||||||||||||||| |||||| || ||||| |
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| T |
31057256 |
cagaaaggtgattgatatcaagtgcaagttccttcaaattaaccaagttttgtatggaatcagggattgaaccagaaagacctatgttatcaaagtagag |
31057157 |
T |
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| Q |
116 |
caaggtcaagctagacatgttccacaaggagtgaggaattggtccatacaacttggtgttattagcaaggatgagttgatttaatttgctcatgttccct |
215 |
Q |
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| T |
31057156 |
tacggtcaagctagacatgttccacaaggaatgtggaattggaccagacatcttggtgttattagaaagaacaagtgtatctaatttgctcaagttccct |
31057057 |
T |
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| Q |
216 |
atg |
218 |
Q |
| |
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||| |
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| T |
31057056 |
atg |
31057054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 31182764 - 31182581
Alignment:
| Q |
35 |
aagtgcaagtacatccaaattaatcaagttttgtactgaatcagggattgaaccagaaagactcatgttaaaaaggtagatcaaggtcaagctagacatg |
134 |
Q |
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||||||||| ||| || |||||||||||||| || || |||||||||||||||||||||||||||||| |||| |||| | |||||||||||||| |
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| T |
31182764 |
aagtgcaagctcattcacattaatcaagttttcgacagattcagggattgaaccagaaagactcatgttataaagtaagatagtgttcaagctagacatg |
31182665 |
T |
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| Q |
135 |
ttccacaaggagtgaggaattggtccatacaacttggtgttattagcaaggatgagttgatttaatttgctcatgttccctatg |
218 |
Q |
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|||||||||||||| |||||||| ||| | | ||| ||||||||| |||||| ||| ||||||||| |||||||| |||||| |
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| T |
31182664 |
ttccacaaggagtgtggaattggaccagaaacctttgtgttattacaaaggataagtaaatttaatttactcatgttgcctatg |
31182581 |
T |
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