View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9901_low_3 (Length: 464)

Name: NF9901_low_3
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9901_low_3
NF9901_low_3
[»] chr6 (2 HSPs)
chr6 (145-440)||(31213227-31213525)
chr6 (14-99)||(31213097-31213182)
[»] chr8 (1 HSPs)
chr8 (145-224)||(6225103-6225182)
[»] chr4 (1 HSPs)
chr4 (145-224)||(1512587-1512666)
[»] chr3 (2 HSPs)
chr3 (145-215)||(25016645-25016714)
chr3 (145-225)||(27099280-27099359)
[»] scaffold1333 (1 HSPs)
scaffold1333 (179-224)||(851-896)
[»] chr5 (1 HSPs)
chr5 (180-225)||(16792770-16792815)
[»] chr1 (1 HSPs)
chr1 (185-217)||(18945016-18945048)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 145 - 440
Target Start/End: Original strand, 31213227 - 31213525
Alignment:
Q  145 gtggtatttttaatttagatttgctagtaaatcaatttgcagtaaaataatggtagcaaaatctatattttctggtagtgaaataaatatatgattacgc 244  Q
    ||||||||||||||| ||||||||||||||  || |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||    
T  31213227 gtggtatttttaattcagatttgctagtaa--cactttgtagtaaaataatggcagcaaaatctatattttcttgtagtgaaataaatatatgatttcgc 31213324  T
Q  245 ggtataaataatgtgttcgtcttcatgctagtt----caagataannnnnnnnaggagtaac-ctatactctaacatgtattcctctatgatttctccta 339  Q
    ||||||||||||||||||||||||| |||||||    |||||||         ||||||||  | |||||||||||| ||||||||||||||||||||||    
T  31213325 ggtataaataatgtgttcgtcttcacgctagttaattcaagatagttttttttaggagtaaatccatactctaacatatattcctctatgatttctccta 31213424  T
Q  340 ctatcgcaggtaaggacttgagctggcaagggaaattgaaaattatcgcaggtaacacatctgatttcatatttgatttgtctcattaactattttgtgg 439  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31213425 ctatcgcaggtaaggagttgagctggcaagggaaaatgaaaattatcgcaggtaacacatctgatttcatatttgatttgtctcattaactattttgtgg 31213524  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 31213097 - 31213182
Alignment:
Q  14 agatggtgactcgatgatcggacatggtgaatggtgatcggagacgaagcttctgtttgggacgatgagtgtaatataagctttgt 99  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||  |||||| |||| ||| ||||||||||| |||||    
T  31213097 agatggtgactcggtgatcggacatggtgaatcgtgatcggagacgaagctattgtttgagacggtgaatgtaatataagatttgt 31213182  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 6225182 - 6225103
Alignment:
Q  145 gtggtatttttaatttagatttgctagtaaatcaatttgcagtaaaataatggtagcaaaatctatattttctggtagtg 224  Q
    ||||||||||||||| | ||||||||| ||  ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  6225182 gtggtatttttaattcaaatttgctagcaacacaatttgtagtaaaataatggtagcaaaatctatattttcttgtagtg 6225103  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 1512587 - 1512666
Alignment:
Q  145 gtggtatttttaatttagatttgctagtaaatcaatttgcagtaaaataatggtagcaaaatctatattttctggtagtg 224  Q
    ||||||||||||||| ||||||||||| |   ||||||| |||||||||||||||| |||||||||||||||| ||||||    
T  1512587 gtggtatttttaattcagatttgctagcatcacaatttgtagtaaaataatggtagtaaaatctatattttcttgtagtg 1512666  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 25016714 - 25016645
Alignment:
Q  145 gtggtatttttaatttagatttgctagtaaatcaatttgcagtaaaataatggtagcaaaatctatatttt 215  Q
    ||||||||||||||| ||||||||||| ||  ||||||| |||||| ||||||||||||||||||||||||    
T  25016714 gtggtatttttaattaagatttgctagcaacacaatttgtagtaaa-taatggtagcaaaatctatatttt 25016645  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 27099359 - 27099280
Alignment:
Q  145 gtggtatttttaatttagatttgctagtaaatcaatttgcagtaaaataatggtagcaaaatctatattttctggtagtga 225  Q
    ||||||||||||||| ||||||||||| ||  |||||   |||||||||||||||||||||| ||||| |||| |||||||    
T  27099359 gtggtatttttaattcagatttgctagcaacacaattat-agtaaaataatggtagcaaaatttatatgttcttgtagtga 27099280  T

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Target: scaffold1333 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1333
Description:

Target: scaffold1333; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 851 - 896
Alignment:
Q  179 atttgcagtaaaataatggtagcaaaatctatattttctggtagtg 224  Q
    ||||| |||||||||||||| |||||||| ||||||||| ||||||    
T  851 atttgtagtaaaataatggtggcaaaatcaatattttcttgtagtg 896  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 16792815 - 16792770
Alignment:
Q  180 tttgcagtaaaataatggtagcaaaatctatattttctggtagtga 225  Q
    |||| ||||| ||||||||||||||||| ||||||||| |||||||    
T  16792815 tttgtagtaatataatggtagcaaaatcaatattttcttgtagtga 16792770  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 18945048 - 18945016
Alignment:
Q  185 agtaaaataatggtagcaaaatctatattttct 217  Q
    ||||||||||||||||||||||| |||||||||    
T  18945048 agtaaaataatggtagcaaaatccatattttct 18945016  T

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