View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9901_low_34 (Length: 205)
Name: NF9901_low_34
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9901_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 27474076 - 27474251
Alignment:
| Q |
13 |
caaaggtacatttctcaattcacaatctcaaatctcaattaatcaaataattaacatgaaaatgcttcaaaatctgagaaattagcacataatagcatac |
112 |
Q |
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| T |
27474076 |
caaaggtacatttctcaattcacaatctcaaatctcaattaatcaaataattaacatgaaaatgcttcaaaatttgagaaattagcacataatagcatac |
27474175 |
T |
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| Q |
113 |
ctctgatgtagatggtgtggcttcgttgataatcttttcatgttctttctctctaagcgttcgaattggagaaact |
188 |
Q |
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| T |
27474176 |
ctccgatgtagatggtgtggcttcgttgataatcttttcatgttctttctctctaagcgttcgaatcggagaaact |
27474251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 1178814 - 1178686
Alignment:
| Q |
57 |
aaataattaacatgaaaatgcttcaaaatctgagaaattagcacataatagcatacctctgatgtagatggtgtggcttcgttgataatcttttcatgtt |
156 |
Q |
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|||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| |
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| T |
1178814 |
aaataactaacacgaaattgcttcaaaatctgataaattagcacataatagcatacctctgatggcgatggtgctgcttcgt---taatcttttcatgtt |
1178718 |
T |
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| Q |
157 |
ctttctctctaagcgttcgaattggagaaact |
188 |
Q |
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| T |
1178717 |
cgttttctctaagtgttcgaatcggagaaact |
1178686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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