View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9901_low_4 (Length: 445)
Name: NF9901_low_4
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9901_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 27 - 431
Target Start/End: Original strand, 45745549 - 45745953
Alignment:
| Q |
27 |
taccaaatgtatagcaccatttctggttccaccgattccaccagataaaacatcaaggttggcagatctagcaatcatagactgaaacatatctgcgtat |
126 |
Q |
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| T |
45745549 |
taccaaatgtatagcaccatttctggttccaccgattccaccagataaaacatcaaggttggcagatctagcaatcatagactgaaacatatctgcgtat |
45745648 |
T |
|
| Q |
127 |
cgattctattcaagaaaataataatcaattaaaacgatatactaaacaaacctacacaaacattgatggcaattnnnnnnnnnnnnctatatcactcaga |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||| |
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| T |
45745649 |
cgattctattcaagaaaataataatcaattaaaacgatatactaaacaaacctacacaaacattgatggtaattaaaaaacaaaaactgtatcgctcaga |
45745748 |
T |
|
| Q |
227 |
aaatggtggctacaaaatttcctatcaaaatcggttaaattacaaagaacaccatgaggtagagtatttgataatcataccgcatccatcaaagtttcca |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45745749 |
aaatggtggctacaaaatttcctatcaaaatcggttaaattacaaagaacaccatgaggtagaatatttgataatcataccgcatccatcaaagtttcca |
45745848 |
T |
|
| Q |
327 |
caagtgctaaactgttgattattactatcccagtatctctcgtagcttcagtgacaaagccagcgggtttaggaccaatacaagaagaaatcaaccgtgc |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45745849 |
caagtgctaaactgttgattattactatcccagtatctctcgtagcttcagtgacaaagccagcgggtttaggaccaatacaagaagaaatcaaccgtgc |
45745948 |
T |
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| Q |
427 |
atact |
431 |
Q |
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| T |
45745949 |
atact |
45745953 |
T |
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