View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9901_low_6 (Length: 422)
Name: NF9901_low_6
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9901_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 51855142 - 51854744
Alignment:
| Q |
19 |
actgatgctctatttaggagtcatgaagaaaggcttgattctaatggtggaaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51855142 |
actgatgctctatttaggagtcatgaagaaagacttgattctaatggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacactagctggtt |
51855043 |
T |
|
| Q |
119 |
gaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacactac--tacactagcttttgttgctgtt---aatcaaattggtggtgatggc |
213 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51855042 |
gaaaaaatgaaaaactaatggtcatggcacatgctacttcaatagacactaccctacactagcttttgttgctgttgttaatcaaattggtggtgatggc |
51854943 |
T |
|
| Q |
214 |
taagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaatgcctaattcagtttcatagttggataagctcaagtactatt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51854942 |
caagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaatgcctaattcagtttcatagttggataagctcaagtactatt |
51854843 |
T |
|
| Q |
314 |
gctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattgaatatgggtgatatgctttgacagtcgagcaacaacctttg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51854842 |
tctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattgaatatgggtgatatgctttgacagtcgatcaacaacctttg |
51854744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 35043339 - 35043384
Alignment:
| Q |
19 |
actgatgctctatttaggagtcatgaagaaaggcttgattctaatg |
64 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
35043339 |
actgatgctctatttaggagccatgaagaaagacttaattctaatg |
35043384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 8944377 - 8943979
Alignment:
| Q |
19 |
actgatgctctatttaggagtcatgaagaaaggcttgattctaatggtggaaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8944377 |
actgatgctctatttaggagtcatgaagaaatacttgattctaatggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacactagctggtt |
8944278 |
T |
|
| Q |
119 |
gaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacactac--tacactagcttttgttgctgtt---aatcaaattggtggtgatggc |
213 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8944277 |
gaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacactacactacactagcttttgttgctgttgttaatcaaattggtggtgatggc |
8944178 |
T |
|
| Q |
214 |
taagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaatgcctaattcagtttcatagttggataagctcaagtactatt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8944177 |
taagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaatgcctaattcagtttcatagttggataatctcaagtactatt |
8944078 |
T |
|
| Q |
314 |
gctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattgaatatgggtgatatgctttgacagtcgagcaacaacctttg |
412 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8944077 |
gctagatcaatatgaaggagcaatactctgcaacatttagtcaaagcgaaagaaattgaatatgggtgatatgctttgacagtcgataaacaacctttg |
8943979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 26887282 - 26887664
Alignment:
| Q |
19 |
actgatgctctatttaggagtcatgaagaaaggcttgattctaatggtggaaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26887282 |
actgatgctctatttaggagtcatgaagaaagacttgattctaatggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacactagctggtt |
26887381 |
T |
|
| Q |
119 |
gaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacactac--tacactagcttttgttgctgtt---aatcaaattggtggtgatggc |
213 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26887382 |
gaaacaatgaaaaactaatggtcatggcgcatgctacttcaatagacactacactacactagcttttgttgctgttgttaatcaaattggtggtgatggc |
26887481 |
T |
|
| Q |
214 |
taagtcatttgtccaattcaattttattttcatagttagaaaatcttcaagagctaaatgcctaattcagtttcatagttggataagctcaagtactatt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26887482 |
taagtcatttgtccaattcaattttattttcatagttaaaaaaccttcaagaactaaatgcctaattcagtttcatagttggataagctcaagtactatt |
26887581 |
T |
|
| Q |
314 |
gctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattgaatatgggtgatatgctttgacagt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26887582 |
gctagaccaatatgaaggagcaatactctgcaacattttgtcaaagcgaaagaaattgaatatgggtgatatgctttgacagt |
26887664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 26887667 - 26887710
Alignment:
| Q |
352 |
tgtcaaagcgaaagaaattgaatatgggtgatatgctttgacagt |
396 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
26887667 |
tgtcaaagcgaaagaa-ttgaatatggatgatatgctttgacagt |
26887710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 62 - 301
Target Start/End: Complemental strand, 21989075 - 21988833
Alignment:
| Q |
62 |
atggtggaaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaat |
161 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| ||||| | |||||||| ||||| ||| || ||||||||||| |
|
|
| T |
21989075 |
atggtggaaggatcaaagagtcaaatgtagctaagtttatatcagcactagctggtggaaactaagaaaaactgatggttatggcatatgctacttcagc |
21988976 |
T |
|
| Q |
162 |
agacactactacactagcttttgttgctgtt---aatcaaattggtggtgatggctaagtcatttgtccaattcaattttattttcatagttagaaaatc |
258 |
Q |
| |
|
|||||||| |||||| |||| ||||||||| ||||||| ||||||||||||||||| |||||| | |||||||||||| |||||||||||||||| | |
|
|
| T |
21988975 |
ggacactacgacactaactttagttgctgttgttaatcaaactggtggtgatggctaagccatttgcctaattcaattttaatttcatagttagaaaacc |
21988876 |
T |
|
| Q |
259 |
ttcaagagctaaatgcctaattcagtttcatagttggataagc |
301 |
Q |
| |
|
|| |||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
21988875 |
atcgagagctaaatgcctaattcaattttatagttggaaaagc |
21988833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University