View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9901_low_8 (Length: 412)

Name: NF9901_low_8
Description: NF9901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9901_low_8
NF9901_low_8
[»] chr3 (8 HSPs)
chr3 (245-396)||(37119101-37119252)
chr3 (122-217)||(37119249-37119344)
chr3 (1-92)||(37119374-37119465)
chr3 (1-87)||(37131101-37131187)
chr3 (137-186)||(37124937-37124986)
chr3 (168-227)||(37135385-37135444)
chr3 (4-81)||(37135212-37135289)
chr3 (1-63)||(37125064-37125126)
[»] chr5 (1 HSPs)
chr5 (5-93)||(1193975-1194063)
[»] chr7 (1 HSPs)
chr7 (5-93)||(31296978-31297066)
[»] chr1 (2 HSPs)
chr1 (168-227)||(20269317-20269376)
chr1 (4-81)||(20269144-20269221)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 8e-71; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 245 - 396
Target Start/End: Complemental strand, 37119252 - 37119101
Alignment:
Q  245 atgtatggtgtgagcatgtttggcgtgactgtgtgtgagtcaaagtttgatgtttattttggtcatttaagacggatattttgtattttttcttcgtatg 344  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  37119252 atgtatggtgtgaccatgtttggcgtgactgtgtgtgagtcaaagtttgatgtttattttggtcatttaagacggattttttgcattttttcttcgtatg 37119153  T
Q  345 ttattagcaaagtaggtagtacttgaaaaaaggcagtacgtgagtacaaaat 396  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37119152 ttattagcaaagtaggcagtacttgaaaaaaggcagtacgtgagtacaaaat 37119101  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 37119344 - 37119249
Alignment:
Q  122 caattgtagcatggccttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37119344 caattgtagcatggccttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagggacgacccttcttgttccatcatgtgaatgt 37119249  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 37119465 - 37119374
Alignment:
Q  1 gaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgttggtgaagt 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37119465 gaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgttggtgaagt 37119374  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 37131187 - 37131101
Alignment:
Q  1 gaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgttggt 87  Q
    |||||||| ||||||||||||||  ||| || |||||||| ||| || ||||||||||||||||||||||| |||||||||||||||    
T  37131187 gaggtaacaggagaacaaatagattcagttagactcacatctctgctaagaaagaaattctgtcatgcagaattggtgagtgttggt 37131101  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 37124986 - 37124937
Alignment:
Q  137 cttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagg 186  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  37124986 cttgtgtagctagtattcctcattaccctgtccctgtgtgtgagataagg 37124937  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 37135385 - 37135444
Alignment:
Q  168 ccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgtcatcaagaat 227  Q
    |||||||| |||||||| | |||| |||||||||||||| |||||||||||||| |||||    
T  37135385 ccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatgtcatctagaat 37135444  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 37135212 - 37135289
Alignment:
Q  4 gtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgtcatgcagatttggtgagt 81  Q
    |||||||||||| | || ||| ||| ||||||  ||| |||||| |||||||||||| || |||||||||||||||||    
T  37135212 gtaactggagaagagattgactcagttaaactggcatctctactaagaaagaaattcggttatgcagatttggtgagt 37135289  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 37125126 - 37125064
Alignment:
Q  1 gaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgt 63  Q
    ||||| || |||||| |||||||| ||| || |||||||||||| || |||||||||||||||    
T  37125126 gaggttacaggagaataaatagactcagttagactcacatgtctgctaagaaagaaattctgt 37125064  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 1193975 - 1194063
Alignment:
Q  5 taactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgttggtgaagtg 93  Q
    |||| ||||||||||||||| ||| || |||||||| ||| || ||||||||||||||||||||||| |||||||||||||||||||||    
T  1193975 taacaggagaacaaatagactcagttagactcacatttctgctaagaaagaaattctgtcatgcagaattggtgagtgttggtgaagtg 1194063  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 31297066 - 31296978
Alignment:
Q  5 taactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgttggtgaagtg 93  Q
    |||| ||||||||||||||| ||| || | |||||| ||| || ||||||||||| ||||||||||| |||||||||||||||||||||    
T  31297066 taacaggagaacaaatagactcagttagagtcacatctctgctaagaaagaaattatgtcatgcagaattggtgagtgttggtgaagtg 31296978  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 20269317 - 20269376
Alignment:
Q  168 ccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgtcatcaagaat 227  Q
    |||||||| |||||||| | |||| |||||||||||||| |||||||||||||| |||||    
T  20269317 ccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatgtcatctagaat 20269376  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 20269144 - 20269221
Alignment:
Q  4 gtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgtcatgcagatttggtgagt 81  Q
    |||||||||||| | || ||| ||| ||||||  ||| |||||| |||||||||||| || |||||||||||||||||    
T  20269144 gtaactggagaagagattgactcagttaaactggcatctctactaagaaagaaattcggttatgcagatttggtgagt 20269221  T

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