View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9902_high_11 (Length: 313)
Name: NF9902_high_11
Description: NF9902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9902_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 36881832 - 36881550
Alignment:
| Q |
18 |
gtattctcctccttatccattgcaagaattaagttattccaaagttctggttttgagtgcttaatcattctcattctcaatgtctcaacaataacgggtt |
117 |
Q |
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| T |
36881832 |
gtattctcctccttatccattgcaagaattaagttattccaaagttctggttttgagtgcttaatcattctcattctcaatgtctcaacaataacgggtt |
36881733 |
T |
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| Q |
118 |
gtcttgacttcactgcaacatgcaatacattttctttccttgagtttgtgtcatgaatggcacttggaattttgtctagaaattcgttaaccagttcaac |
217 |
Q |
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| T |
36881732 |
gtcttgacttcactgcaacatgcaatacattttctttccttgagtttgtgtcatgaatggcacttggaattttgtctagaaattcgttaaccagttcaac |
36881633 |
T |
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| Q |
218 |
tattccatttttcgctgcaaccaaaaatggtgtctcctttttgtcaacttcttccttttcattttcaggttttgtttccgtct |
300 |
Q |
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| T |
36881632 |
tattccatttttcgctgcaaccaaaaatggtgtctcctttttgtcaacttcttccttttcattttcaagttttgtttccgtct |
36881550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 36892916 - 36892689
Alignment:
| Q |
18 |
gtattctcctccttatccattgcaagaattaagttattccaaagttctggttttgagtgcttaatcattctcattctcaatgtctcaacaataacgggtt |
117 |
Q |
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|||||||| |||| ||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| |||| |
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| T |
36892916 |
gtattctcatcctcatccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcattctca------aggtctcaacaataagaggtt |
36892823 |
T |
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| Q |
118 |
gtcttgacttcactgcaacatgcaatacattttctttccttgagtttgtgtcatgaatggcacttggaattttgtctagaaattcgttaaccagttcaac |
217 |
Q |
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| T |
36892822 |
gcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtacttttattagaatttcgttaaccatttcaac |
36892723 |
T |
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| Q |
218 |
tattccatttttcgctgcaaccaaaaatggtgtc |
251 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
36892722 |
tattccattttttgctgcaaccaaaaatggtgtc |
36892689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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