View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9902_high_12 (Length: 271)
Name: NF9902_high_12
Description: NF9902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9902_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 256
Target Start/End: Complemental strand, 9665486 - 9665234
Alignment:
| Q |
4 |
gtagaagcagagatatgatctttaggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggat |
103 |
Q |
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| T |
9665486 |
gtagcagcaaagatatgatctttaggaaggtggagagattggagctcaaataaccgacccaccctgcgacccatcccaatgatctgcttcgtctgtggat |
9665387 |
T |
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| Q |
104 |
cctgtacctgaacaccagatgttgaaaaatcaacattcagtccttgttcacacaattgaccaacagaaataagattaagtgtcaagttaggaatgtaata |
203 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9665386 |
cctgtacctgaacaccagatgttgaaaaataaacattcagtccttgttcacacaattgaccaacaaaaataagattaagtgtcaagttaggaatgtaata |
9665287 |
T |
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| Q |
204 |
tgtgttaggtagggtgagatttgaggtggatacatgaccggtataagtgatgt |
256 |
Q |
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| T |
9665286 |
tgtgtcaggcagggtgagatttgaggtggatacatgaccggtatgagtgatgt |
9665234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 11351060 - 11350953
Alignment:
| Q |
4 |
gtagaagcagagatatgatctttaggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggat |
103 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
11351060 |
gtagcagcagagatatgatctttaggaaggtggagagattggagctcaaataaccgacccaccctgcgacccgtcccaatgatctgcttcgtctgtggat |
11350961 |
T |
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| Q |
104 |
cctgtacc |
111 |
Q |
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| T |
11350960 |
cctatacc |
11350953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 12617584 - 12617358
Alignment:
| Q |
28 |
ggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggatcctgtacctgaacaccagatgttg |
127 |
Q |
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| T |
12617584 |
ggaagatgaagagattgaagctcaaataatagacccaccctgcgacatgtcccaatgatatgtttcgtttgtagattaagtacatggacacctgaaggag |
12617485 |
T |
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| Q |
128 |
aaaaatcaacattcagtccttgttcacacaattgaccaacagaaataagattaagtgtcaagttaggaatgtaatatgtgttaggtagggtgagatttga |
227 |
Q |
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|||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||| ||| ||| || ||||| ||||| |
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| T |
12617484 |
aaaaataaacattttgtccttgttcacacaattggccaacagaaataagattaagtgtcaagttctgtatgcaatagatgtaaggaagagtgaggtttga |
12617385 |
T |
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| Q |
228 |
ggtggatacatgaccggtataagtgat |
254 |
Q |
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|||||||||||||| |||| |||||| |
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| T |
12617384 |
ggtggatacatgactagtatgagtgat |
12617358 |
T |
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