View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9902_low_1 (Length: 617)
Name: NF9902_low_1
Description: NF9902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9902_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 110 - 601
Target Start/End: Complemental strand, 12882319 - 12881827
Alignment:
| Q |
110 |
tgtatccgacaccggaatacttctaatctaagacgtgttggtgcttcatggaagacaagtgatacagagaa-taattaagaggagtttctagccacagtt |
208 |
Q |
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| T |
12882319 |
tgtatccgacaccgaaatacgtctaatctaaggcatgttcgcgcttcatggaagtcaagtgatacagagaaataattaagaggagtttctagccacagtt |
12882220 |
T |
|
| Q |
209 |
ttgagtgtcatccaaatgagagtgctaatttcatccctttctcaaacaccacaaatccttaaaattcaatggccaaagagcttccaaaagtacttgttct |
308 |
Q |
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| T |
12882219 |
ttgagtgtcatccaaataaaagtgctaagttcatccctttctcaaacaccacaaatccttaaaattcaatggccaaagaccttccaaaagtacttgttct |
12882120 |
T |
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| Q |
309 |
tggtccaccaacatgtttctccaccttcgaatcactctactctcacaaattcaatttcctaaaccccaaaccctcaggcctatcactgcaacaattcatc |
408 |
Q |
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| T |
12882119 |
tggtccaccaacatgtttctccaccttcgaatcactctactctcacaaattcaatttcctaaaccccaaaccctcaggcctatcactgcaacaattcatc |
12882020 |
T |
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| Q |
409 |
ctttcccacaaccacaacccatcaacaattcccgccatattctgtagcgccgcatattccatcaccaccgacgttctcaaccttcttccctcgctcagtc |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12882019 |
ctttcccacaaccacaacccatcaacaattcccgccatattctgcagcgccgcatattccatcaccaccgacgttctcaaccttcttccctcgctcagtc |
12881920 |
T |
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| Q |
509 |
tcgtcgttacttccagtgttggaactgatcacattgaccttaatgagtgccgtcgtcgcggaattcaggttgccggtgctggaggagttttct |
601 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12881919 |
tcgtcgttacttccagtgttggaactgatcacattgaccttaatgagtgccgtcgtcgcggaattcaggttgccggtgctggaggagttttct |
12881827 |
T |
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