View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9902_low_13 (Length: 327)
Name: NF9902_low_13
Description: NF9902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9902_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 17882707 - 17882410
Alignment:
| Q |
19 |
actgtgctcaggaggtttggatataatgatgatatcaagcttgctgatgatttaattccacctttgaaacgtgcacctgatcaggtgtttcttttgagat |
118 |
Q |
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| T |
17882707 |
actgtgctcaggaggtttggatataatgatgatatcaagcttgctgatgatttaattccacctttgaaacgtgcacctgatcaggtgtttcttttgagat |
17882608 |
T |
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| Q |
119 |
gaattgtggcctcatgatttatgttcttagtatgttatacctgtttgtattcaattagttgacaacatggaacttgcatcttattctattcacgttggat |
218 |
Q |
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| T |
17882607 |
gaattgtgacctcatgatttatgttcttagtatgttatacctgtttgtattcaattagttgacaacatggaacttgcatcttattctattcacgttggat |
17882508 |
T |
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| Q |
219 |
ttaatgtctgcagagtgttgaattaacaaatgaagcaattgatttcttgaagacagtttttgatgaacttgacagtgattttgtatgtcatctgtgct |
316 |
Q |
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| T |
17882507 |
ttaatgtctgcagagtgttgaattaacaaatgaagcaattgatttcttgaagacagtttttgatgaacttgacagtgattttgtatgtcatctgtgct |
17882410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 302
Target Start/End: Complemental strand, 14775331 - 14775053
Alignment:
| Q |
22 |
gtgctcaggaggtttggatataatgatgatatcaagcttgctgatgatttaattccacctttgaaacgtgcacctgatcaggtgtttcttttgagatgaa |
121 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14775331 |
gtgctcaggaagtttggatataatgatgatatcaagcttgctgataatttgattccacctttgaaacgtgcacctgatcaggtgtttcttttcagatgaa |
14775232 |
T |
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| Q |
122 |
ttgtggcctca-tgatttatgttcttagtatgttatacctgtttgtattcaattagttgacaacatggaacttgcatcttattctattcacgttggattt |
220 |
Q |
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| T |
14775231 |
ttgtgaccttatttttttatgttctttatatgttatacatgtttgtattc-atttgttgagtataagaaactt--atcttattctattctcatcggattt |
14775135 |
T |
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| Q |
221 |
aatgtctgcagagtgttgaattaacaaatgaagcaattgatttcttgaagacagtttttgatgaacttgacagtgattttgt |
302 |
Q |
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| T |
14775134 |
aatgtctgcagagtgttgagttaacaaatgaagcaatttgtttcttggagaaaatctttgatggacttgatggtgattttgt |
14775053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 25 - 305
Target Start/End: Complemental strand, 15050164 - 15049893
Alignment:
| Q |
25 |
ctcaggaggtttggatataatgatgatatcaagcttgctgatgatttaattccacctttgaaacgtgcacctgatcaggtgtttcttttgagatgaattg |
124 |
Q |
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||||||| ||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| ||||| |
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| T |
15050164 |
ctcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttgaaacg--cacctgatcaggtctttcttttgagataaattg |
15050067 |
T |
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| Q |
125 |
tggcctcatgatttatgttcttagtatgttatacctgtttgtattcaattagttgacaacatggaacttgcatcttattctattcacgttggatttaatg |
224 |
Q |
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|||| ||||| |||| ||||| |||||||||| ||||||||||||||| || |||||||||||| ||||| ||| || | |||||||||||| |
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| T |
15050066 |
tggcatcatgtattatattctttatatgttatacatgtttgtattcaatttgtcgacaacatggaa-------cttatgctactctcattggatttaatg |
15049974 |
T |
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| Q |
225 |
tctgcagagtgttgaattaacaaatgaagcaattgatttcttgaagacagtttttgatgaacttgacagtgattttgtatg |
305 |
Q |
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||| |||||||||||||| || |||||||||||||||||||| ||||| | ||||||||| |||| ||||||||||||| |
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| T |
15049973 |
tctccagagtgttgaattgactgatgaagcaattgatttcttggagacaatatttgatgaatttgatggtgattttgtatg |
15049893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 33 - 290
Target Start/End: Complemental strand, 15017387 - 15017135
Alignment:
| Q |
33 |
gtttggatataatgatgatatcaagcttgctgatgatttaattccacctttgaaacgtgcacctgatcaggtgtttcttttgagatgaattgtggcctca |
132 |
Q |
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||||||||||||| ||||| |||||||||||| ||||||| |||| |||||||| | ||||||||||||||||||||||||||||| ||||||||| || |
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| T |
15017387 |
gtttggatataattatgatgtcaagcttgctgctgatttatttccgcctttgaagcttgcacctgatcaggtgtttcttttgagataaattgtggcatct |
15017288 |
T |
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| Q |
133 |
tgatttatgttcttagtatgttatacctgtttgta-ttcaattagttgacaacatggaacttgcatcttattctattcacgttggatttaatgtctgcag |
231 |
Q |
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|| ||||||||| ||||||||||||||||||| ||||||| |||||||| || || | |||||||||||| | |||| |||||||| ||||| |
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| T |
15017287 |
tgtattatgttctctatatgttatacctgtttgtatttcaatttgttgacaatat-----atggaacttattctattctcattgg-tttaatgtatgcag |
15017194 |
T |
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| Q |
232 |
agtgttgaattaacaaatgaagcaattgatttcttgaagacagtttttgatgaacttga |
290 |
Q |
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| T |
15017193 |
agtgttgaattgacaaatgaagcagttgatttcttggagacaatctttgatgaatttga |
15017135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 36874407 - 36874675
Alignment:
| Q |
19 |
actgtgctcaggaggtttggatataatgatgatatcaagcttgctgatgatttaattccacctttgaaacgtgcacctgatcaggtgtttcttttg---- |
114 |
Q |
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||||||||||| | ||| |||||||||||||| |||||||||||||||||| | ||||||||||||| || | |||||||||||| || |||| |
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| T |
36874407 |
actgtgctcagaaagttcggatataatgatgaaatcaagcttgctgatgatgcagttccacctttgaagcgcactcctgatcaggtgctttttttattct |
36874506 |
T |
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| Q |
115 |
----------agatgaattgtggcctcatgatttatgttcttagtatgttatacctgtttgtattcaattagttgacaacatggaacttgcatcttattc |
204 |
Q |
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|| ||||| ||| || ||| ||||| |||| |||||||||||||||||| ||||||| |||||||| | || | | ||||||||| |
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| T |
36874507 |
ctttttttctagttgaatcttggtcttgtgaattatgctctttatatgttatacctgtttgtgttcaatttcttgacaacttagatcctatatcttattc |
36874606 |
T |
|
| Q |
205 |
tattcacgttggatttaatgtctgcagagtgttgaattaacaaatgaagcaattgatttcttgaagaca |
273 |
Q |
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||||| | |||||||||| || |||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
36874607 |
tattctctttggatttaacgtttgcagagtgttgaattgacacatgaagcaattgatttcttgaagaca |
36874675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 53866656 - 53866755
Alignment:
| Q |
31 |
aggtttggatataatgatgatatcaagcttgctgatgatttaattccacctttgaaacgtgcacctgatcaggtgtttcttttgagatgaattgtggcct |
130 |
Q |
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| T |
53866656 |
aggtttggatataatgatgatatcaaacttgctgatcatctaattccggatttgaaacgtgctcctgatcaggtgtttcttttgatatgaaatgtggcct |
53866755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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