View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9902_low_17 (Length: 287)
Name: NF9902_low_17
Description: NF9902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9902_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 27 - 275
Target Start/End: Original strand, 9079525 - 9079773
Alignment:
| Q |
27 |
acgaataagataactgataacagataaaagtgtacctgatccatcatcttgtgtttgagtacatgattacgatcaagaattttgatggcaacatattctc |
126 |
Q |
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| T |
9079525 |
acgaataatataatcgataacagataagattgtacctgatccatcatattgtgtttgagtacatgattacgatcaagaattttgatggcaacataatctc |
9079624 |
T |
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| Q |
127 |
cattttgaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcccagctcatacttccctactctagtacgaggtgcttgtgt |
226 |
Q |
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| T |
9079625 |
cattttcaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcccagctcatacttccctactctagtacgtggtgcttgtgt |
9079724 |
T |
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| Q |
227 |
taccttattactcatcatgtacaacaattctgtactttccttcctctct |
275 |
Q |
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| T |
9079725 |
taccttattactcatcatgtacaacaattctgtactttcctttctctct |
9079773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 27 - 256
Target Start/End: Original strand, 9088302 - 9088531
Alignment:
| Q |
27 |
acgaataagataactgataacagataaaagtgtacctgatccatcatcttgtgtttgagtacatgattacgatcaagaattttgatggcaacatattctc |
126 |
Q |
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|||||||| |||| |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9088302 |
acgaataatataatcgataacagataagattgtacctgatccatcatattgtgtttgagtacatgattacgatcaagaattttgatggcaacataatctc |
9088401 |
T |
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| Q |
127 |
cattttgaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcccagctcatacttccctactctagtacgaggtgcttgtgt |
226 |
Q |
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| T |
9088402 |
cattttcaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcccatctcgtacttcccaactctagtacgaggtcttggtgg |
9088501 |
T |
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| Q |
227 |
taccttattactcatcatgtacaacaattc |
256 |
Q |
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| T |
9088502 |
taccttattactcatcatgtacaacaattc |
9088531 |
T |
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Back To:
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