View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9902_low_2 (Length: 555)

Name: NF9902_low_2
Description: NF9902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9902_low_2
NF9902_low_2
[»] chr6 (5 HSPs)
chr6 (1-121)||(6721426-6721546)
chr6 (495-537)||(6721592-6721634)
chr6 (366-467)||(6716310-6716412)
chr6 (498-532)||(6716312-6716346)
chr6 (297-337)||(6716372-6716412)
[»] chr4 (5 HSPs)
chr4 (421-465)||(42230090-42230135)
chr4 (503-532)||(42230159-42230188)
chr4 (500-537)||(42230807-42230844)
chr4 (496-524)||(42230685-42230713)
chr4 (414-469)||(42230739-42230795)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 5e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 6721426 - 6721546
Alignment:
Q  1 taccttattatgttttctcaccagaggttatgatcgtaaagaaaaggaaaagcgtacttgtattgaccannnnnnnacagatatcgcttaatcaagtaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||       || |||||||||||||||||||||    
T  6721426 taccttattatgttttctcaccagaggttatgatcgtaaagaaaagggaaagcgtacttgtaatgaccatttttttacggatatcgcttaatcaagtaag 6721525  T
Q  101 attgggaatattcttagttta 121  Q
    |||||||||||||||||||||    
T  6721526 attgggaatattcttagttta 6721546  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 6721592 - 6721634
Alignment:
Q  495 taatttagtttgtgattcaaagtttcaattttttgttgacttt 537  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6721592 taatttagtttgtgattcaaagtttcaattttttgttgacttt 6721634  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 366 - 467
Target Start/End: Original strand, 6716310 - 6716412
Alignment:
Q  366 tttttagtttgtgattcgaagtttcagtattttgttgagtttcttcaatgttaagttcaatgaaagttattcattgttca-ttacactcatatatatcat 464  Q
    ||||||||||||||||| |||||||| | ||||||||  |||  ||  |||| | |||||||||||||| |||||||||| ||||| ||| |||||||||    
T  6716310 tttttagtttgtgattcaaagtttcaattttttgttggttttactctgtgttgatttcaatgaaagttaatcattgttcatttacattcaaatatatcat 6716409  T
Q  465 tat 467  Q
    |||    
T  6716410 tat 6716412  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 532
Target Start/End: Original strand, 6716312 - 6716346
Alignment:
Q  498 tttagtttgtgattcaaagtttcaattttttgttg 532  Q
    |||||||||||||||||||||||||||||||||||    
T  6716312 tttagtttgtgattcaaagtttcaattttttgttg 6716346  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 6716372 - 6716412
Alignment:
Q  297 aaagttaataattgttcatttacatcctaatatatcattat 337  Q
    ||||||||| ||||||||||||||| | |||||||||||||    
T  6716372 aaagttaatcattgttcatttacattcaaatatatcattat 6716412  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 465
Target Start/End: Complemental strand, 42230135 - 42230090
Alignment:
Q  421 ttcaatgaaagttattcattgttcatt-acactcatatatatcatt 465  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||||    
T  42230135 ttcaatgaaagttaatcattattcatttacactcatatatatcatt 42230090  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 532
Target Start/End: Complemental strand, 42230188 - 42230159
Alignment:
Q  503 tttgtgattcaaagtttcaattttttgttg 532  Q
    ||||||||||||||||||||||||||||||    
T  42230188 tttgtgattcaaagtttcaattttttgttg 42230159  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 537
Target Start/End: Complemental strand, 42230844 - 42230807
Alignment:
Q  500 tagtttgtgattcaaagtttcaattttttgttgacttt 537  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  42230844 tagtttgtggttcaaagtttcaattttttattgacttt 42230807  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 524
Target Start/End: Complemental strand, 42230713 - 42230685
Alignment:
Q  496 aatttagtttgtgattcaaagtttcaatt 524  Q
    |||||||||||||||||||||||||||||    
T  42230713 aatttagtttgtgattcaaagtttcaatt 42230685  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 469
Target Start/End: Complemental strand, 42230795 - 42230739
Alignment:
Q  414 tgttaagttcaatgaaagttattcattgttca-ttacactcatatatatcattatgc 469  Q
    |||| |||||||||||||||| ||||| |||| |||||| |||||||| ||||||||    
T  42230795 tgttgagttcaatgaaagttaatcatttttcatttacacccatatataccattatgc 42230739  T

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