View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9902_low_23 (Length: 237)

Name: NF9902_low_23
Description: NF9902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9902_low_23
NF9902_low_23
[»] chr4 (10 HSPs)
chr4 (15-165)||(54157108-54157258)
chr4 (155-224)||(54157276-54157345)
chr4 (28-141)||(53869107-53869224)
chr4 (155-224)||(22405322-22405392)
chr4 (166-218)||(23638364-23638416)
chr4 (165-225)||(53994434-53994494)
chr4 (174-224)||(42576629-42576679)
chr4 (174-215)||(6944746-6944787)
chr4 (174-215)||(38942011-38942052)
chr4 (165-209)||(53993668-53993712)
[»] chr6 (4 HSPs)
chr6 (155-224)||(11324746-11324815)
chr6 (156-224)||(13220877-13220945)
chr6 (165-224)||(13225210-13225269)
chr6 (174-220)||(25344859-25344905)
[»] chr2 (9 HSPs)
chr2 (155-223)||(8194262-8194330)
chr2 (165-224)||(528915-528974)
chr2 (165-211)||(529614-529660)
chr2 (179-223)||(8193741-8193785)
chr2 (155-210)||(13545369-13545424)
chr2 (174-221)||(29156165-29156212)
chr2 (174-211)||(34238830-34238867)
chr2 (174-211)||(34239582-34239619)
chr2 (174-210)||(41320022-41320058)
[»] chr3 (15 HSPs)
chr3 (165-224)||(15274038-15274097)
chr3 (165-224)||(40872927-40872986)
chr3 (165-224)||(40877258-40877317)
chr3 (174-224)||(33639639-33639689)
chr3 (165-224)||(15269709-15269768)
chr3 (174-221)||(54694943-54694990)
chr3 (174-212)||(23310513-23310551)
chr3 (174-212)||(32982281-32982319)
chr3 (166-215)||(23516958-23517007)
chr3 (174-221)||(48208358-48208405)
chr3 (174-224)||(5963859-5963909)
chr3 (165-218)||(31897968-31898021)
chr3 (165-218)||(31913677-31913730)
chr3 (165-218)||(31947325-31947378)
chr3 (174-210)||(48207612-48207648)
[»] chr8 (4 HSPs)
chr8 (165-209)||(5389677-5389721)
chr8 (155-227)||(5390152-5390224)
chr8 (174-215)||(10296943-10296984)
chr8 (175-224)||(26878518-26878567)
[»] chr5 (13 HSPs)
chr5 (174-218)||(19186447-19186491)
chr5 (64-143)||(15047256-15047336)
chr5 (165-224)||(42948163-42948222)
chr5 (56-143)||(15014487-15014575)
chr5 (165-215)||(4927758-4927808)
chr5 (165-211)||(8609205-8609251)
chr5 (166-224)||(8609947-8610005)
chr5 (174-220)||(10555392-10555438)
chr5 (167-209)||(19186991-19187033)
chr5 (174-224)||(23237054-23237104)
chr5 (174-220)||(23244348-23244394)
chr5 (174-220)||(33766498-33766544)
chr5 (174-220)||(42994490-42994536)
[»] chr7 (5 HSPs)
chr7 (165-224)||(12263348-12263407)
chr7 (165-224)||(48604981-48605041)
chr7 (174-220)||(20009077-20009123)
chr7 (174-224)||(20123262-20123312)
chr7 (174-214)||(36671077-36671117)
[»] chr1 (12 HSPs)
chr1 (174-221)||(19990289-19990336)
chr1 (174-221)||(16073311-16073358)
chr1 (174-221)||(28313853-28313900)
chr1 (174-215)||(4968928-4968969)
chr1 (174-215)||(39773404-39773445)
chr1 (174-215)||(42023219-42023260)
chr1 (174-210)||(6632087-6632123)
chr1 (174-214)||(16518499-16518539)
chr1 (174-210)||(17238478-17238514)
chr1 (174-218)||(19991042-19991086)
chr1 (165-217)||(29981274-29981326)
chr1 (83-131)||(36877383-36877431)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 54157108 - 54157258
Alignment:
Q  15 cacagactaccgtatgctaaatgttggtattcaaaaagtttggatgaaatcataataacaagacgtgtcattcaccacattaaatagctatttatctaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  54157108 cacagactaccgtatgctaaatgttggtattcaaaaagtttggatgaaatcataataacaagatgtgtcattcaccacattaaatagctatttatctaac 54157207  T
Q  115 catccaacaattatgtaaagcaatatgcaaactcaatatggagagagagag 165  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  54157208 catccaacaattatgtaaagcaatatgcaagctcaatatggagagagagag 54157258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 54157276 - 54157345
Alignment:
Q  155 gagagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54157276 gagagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 54157345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 53869224 - 53869107
Alignment:
Q  28 atgctaaatgttggtattcaaaaagttt--ggatgaaatcataataacaagacgtgtca--ttcaccacattaaatagctatttatctaaccatccaaca 123  Q
    |||||||||||||||||||| |||||||  | |||||||||||||||||||||| ||||  ||||||||||||||||||||||||| |||||||| ||||    
T  53869224 atgctaaatgttggtattcataaagtttttgaatgaaatcataataacaagacgagtcacattcaccacattaaatagctatttatttaaccatcaaaca 53869125  T
Q  124 attatgtaaagcaatatg 141  Q
    ||||| || |||||||||    
T  53869124 attatctacagcaatatg 53869107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 22405392 - 22405322
Alignment:
Q  155 gagagagagag-gatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    ||||||||||| ||||||| |||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  22405392 gagagagagagagatccattgacttcaagagtaagtctaaatacttactccaaatcttgaccattcatttt 22405322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 23638364 - 23638416
Alignment:
Q  166 gatccatcgactccaagagtaagtctaaagacttactccaaatcttgaccctt 218  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  23638364 gatccatcaactccaagagtaagtctaaagacttactccaaatattgaccctt 23638416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 53994494 - 53994434
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttg 225  Q
    |||||||| ||||||| ||||||||||||||| |||||||||||| |||||||| ||||||    
T  53994494 ggatccattgactccaggagtaagtctaaagagttactccaaatcatgacccttaattttg 53994434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 42576679 - 42576629
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||| |||||    
T  42576679 gactccaagagtaagtttaaaaacttactccaaatattgacccttgatttt 42576629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 6944746 - 6944787
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacc 215  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  6944746 gactccaagagtaagtgtaataacttactccaaatcttgacc 6944787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 38942052 - 38942011
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacc 215  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  38942052 gactccaagagtaagtgtaataacttactccaaatcttgacc 38942011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 53993668 - 53993712
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatc 209  Q
    ||||||||  |||||||||||||||||||||| ||||||| ||||    
T  53993668 ggatccattaactccaagagtaagtctaaagagttactcccaatc 53993712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 11324746 - 11324815
Alignment:
Q  155 gagagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    ||||||||  |||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  11324746 gagagagaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcatttt 11324815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 13220877 - 13220945
Alignment:
Q  156 agagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    |||||||  |||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  13220877 agagagaagggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcatttt 13220945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 13225269 - 13225210
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  13225269 ggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcatttt 13225210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 25344859 - 25344905
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttca 220  Q
    ||||||||||||||||||||||| |||||||| ||| | ||||||||    
T  25344859 gactccaagagtaagtctaaagagttactccacatcctcacccttca 25344905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 8194330 - 8194262
Alignment:
Q  155 gagagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattt 223  Q
    ||||||||  |||||||| ||||||||||||||||||||||| |||||||||||| || ||||||||||    
T  8194330 gagagagaagggatccattgactccaagagtaagtctaaagagttactccaaatcatggcccttcattt 8194262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 528915 - 528974
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||| || |||||    
T  528915 ggatccatggactccaagagtaagtataaagacttactccaaatcttgaccattaatttt 528974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 529660 - 529614
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatctt 211  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||    
T  529660 ggatccattgactccaagagtaagtataaagacttactccaaatctt 529614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 8193741 - 8193785
Alignment:
Q  179 caagagtaagtctaaagacttactccaaatcttgacccttcattt 223  Q
    |||||||||||||||||| |||||||||||| || ||||||||||    
T  8193741 caagagtaagtctaaagagttactccaaatcatggcccttcattt 8193785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 13545424 - 13545369
Alignment:
Q  155 gagagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatct 210  Q
    ||||||||||||||   | |||||||||||||||| || |||||||||||||||||    
T  13545424 gagagagagaggatattttgactccaagagtaagtttatagacttactccaaatct 13545369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 29156165 - 29156212
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttcat 221  Q
    |||||||||||||| || ||||| |||||||||||| |||||||||||    
T  29156165 gactccaagagtaactcaaaagagttactccaaatcctgacccttcat 29156212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 34238830 - 34238867
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatctt 211  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  34238830 gactccaaaagtaagtctatagacttactccaaatctt 34238867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 34239619 - 34239582
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatctt 211  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  34239619 gactccaagagtaagtctatagatttactccaaatctt 34239582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 41320022 - 41320058
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatct 210  Q
    |||||||||||||||| || |||||||||||||||||    
T  41320022 gactccaagagtaagtttatagacttactccaaatct 41320058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 15274097 - 15274038
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  15274097 ggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcatttt 15274038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 40872927 - 40872986
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  40872927 ggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcatttt 40872986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 40877317 - 40877258
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  40877317 ggatccattgactccaagagtaagtctaaacacttactccaaatcatgaccattcatttt 40877258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 33639689 - 33639639
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  33639689 gactccaagagtaagtctaaagacttactccagatcttaacccttcatttt 33639639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 15269709 - 15269768
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    |||||||| ||||||||||||||||||||| ||||||| |||||| ||||| ||||||||    
T  15269709 ggatccattgactccaagagtaagtctaaacacttacttcaaatcatgaccattcatttt 15269768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 54694943 - 54694990
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttcat 221  Q
    |||||||||||||| || ||||| ||||||||||||||||||||||||    
T  54694943 gactccaagagtaactcaaaagagttactccaaatcttgacccttcat 54694990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 23310513 - 23310551
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttg 212  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  23310513 gactccaagagtaagtctatagacttactccaaatcttg 23310551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 32982281 - 32982319
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttg 212  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  32982281 gactccaagagtaagtctatagacttactccaaatcttg 32982319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 23517007 - 23516958
Alignment:
Q  166 gatccatcgactccaagagtaagtctaaagacttactccaaatcttgacc 215  Q
    |||| ||||||||||||||||| | |||||| ||||||||||||||||||    
T  23517007 gatctatcgactccaagagtaaatgtaaagagttactccaaatcttgacc 23516958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 48208405 - 48208358
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttcat 221  Q
    |||||||||||||| || ||||| |||||||||||||| |||||||||    
T  48208405 gactccaagagtaactcaaaagaattactccaaatcttaacccttcat 48208358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 5963909 - 5963859
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    |||||||||||||| |||||| ||||||||||||||| ||  |||||||||    
T  5963909 gactccaagagtaactctaaacacttactccaaatctagattcttcatttt 5963859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 31898021 - 31897968
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgaccctt 218  Q
    |||||||| ||||| ||||||||||  ||||| |||||||||||| ||||||||    
T  31898021 ggatccattgactctaagagtaagtagaaagagttactccaaatcatgaccctt 31897968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 31913730 - 31913677
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgaccctt 218  Q
    |||||||| ||||| ||||||||||  ||||| |||||||||||| ||||||||    
T  31913730 ggatccattgactctaagagtaagtagaaagagttactccaaatcatgaccctt 31913677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 31947378 - 31947325
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgaccctt 218  Q
    |||||||| ||||| ||||||||||  ||||| |||||||||||| ||||||||    
T  31947378 ggatccattgactctaagagtaagtagaaagagttactccaaatcatgaccctt 31947325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 48207612 - 48207648
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatct 210  Q
    |||||||||| |||||||||||||||| |||||||||    
T  48207612 gactccaagaataagtctaaagacttattccaaatct 48207648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 5389677 - 5389721
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatc 209  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  5389677 ggatccattgactccaagagtaagtctaaagacttactccaaatc 5389721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 5390224 - 5390152
Alignment:
Q  155 gagagagagaggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcattttgat 227  Q
    ||||||||  |||||||| |||||| ||||||||||||||||||||||||||||| | ||| || ||||||||    
T  5390224 gagagagaagggatccattgactcctagagtaagtctaaagacttactccaaatcataaccattgattttgat 5390152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 10296984 - 10296943
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacc 215  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  10296984 gactccaagagtaagtgtaataacttactccaaatcttgacc 10296943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 26878567 - 26878518
Alignment:
Q  175 actccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    |||| ||||||||||||||| || ||||||||||| || |||||||||||    
T  26878567 actctaagagtaagtctaaacacatactccaaatcatggcccttcatttt 26878518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 19186447 - 19186491
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgaccctt 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  19186447 gactccaagagtaagtctaaagacttactccaaatcttaaccctt 19186491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 15047256 - 15047336
Alignment:
Q  64 tcataataacaagacgtgtcattcaccacattaaatagctatttatctaa-ccatccaacaattatgtaaagcaatatgca 143  Q
    |||||||  |||||| || |||||||||||||| ||| |||||||||||| ||||||||||||||| || | |||||||||    
T  15047256 tcataattccaagacatgccattcaccacattagatatctatttatctaatccatccaacaattatttatatcaatatgca 15047336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 42948222 - 42948163
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||| ||||| || |||||    
T  42948222 ggatccattgactccaagagtaagtctaaagagttactcccaatcatgacctttaatttt 42948163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 15014487 - 15014575
Alignment:
Q  56 ggatgaaatcataataacaagacgtgtcattcaccacattaaatagctatttatctaa-ccatccaacaattatgtaaagcaatatgca 143  Q
    |||||||||  ||||  ||||| |||||| |||||||  |||||| |||||||||||| ||||||| || ||||||| |||||||||||    
T  15014487 ggatgaaattgtaattccaagatgtgtcactcaccacgataaatatctatttatctaacccatccagcagttatgtacagcaatatgca 15014575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 4927758 - 4927808
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacc 215  Q
    |||||||| || ||||||| ||||| |||||||||||||| ||||||||||    
T  4927758 ggatccattgattccaagattaagtttaaagacttactcccaatcttgacc 4927808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 8609205 - 8609251
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatctt 211  Q
    |||||||| |||||||||||||||| |||| | ||||||||||||||    
T  8609205 ggatccattgactccaagagtaagtataaatagttactccaaatctt 8609251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 8610005 - 8609947
Alignment:
Q  166 gatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    ||||||| ||||| |||||||||  |||||| |||||||||||||||||| || |||||    
T  8610005 gatccattgactcaaagagtaagcataaagagttactccaaatcttgaccattaatttt 8609947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 10555392 - 10555438
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttca 220  Q
    ||||||||||||||||||||||| |||||||| ||| | ||||||||    
T  10555392 gactccaagagtaagtctaaagagttactccacatcctcacccttca 10555438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 19187033 - 19186991
Alignment:
Q  167 atccatcgactccaagagtaagtctaaagacttactccaaatc 209  Q
    |||||| ||||||||||||||||| ||||||||||||| ||||    
T  19187033 atccattgactccaagagtaagtcaaaagacttactcctaatc 19186991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 23237054 - 23237104
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    ||||||||||||||||||||||| |||||||| ||| | ||||| ||||||    
T  23237054 gactccaagagtaagtctaaagagttactccacatcctcaccctccatttt 23237104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 23244394 - 23244348
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttca 220  Q
    ||||||||||||||||||||||| |||||||| ||| | ||||||||    
T  23244394 gactccaagagtaagtctaaagagttactccacatcctcacccttca 23244348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 33766498 - 33766544
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttca 220  Q
    ||||||||||||||||||||||| |||||||| ||| | ||||||||    
T  33766498 gactccaagagtaagtctaaagagttactccacatcctcacccttca 33766544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 42994490 - 42994536
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttca 220  Q
    ||||||||||||||||||||||| |||||||| ||| | ||||||||    
T  42994490 gactccaagagtaagtctaaagagttactccacatcctcacccttca 42994536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 12263407 - 12263348
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    |||||||| ||||||||||||||||||||| ||||||| |||||| ||||| ||||||||    
T  12263407 ggatccattgactccaagagtaagtctaaacacttactacaaatcatgaccattcatttt 12263348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 48604981 - 48605041
Alignment:
Q  165 ggatccatcgactccaagagtaa-gtctaaagacttactccaaatcttgacccttcatttt 224  Q
    |||||||| |||| ||||||||| ||||||| |||||||| ||||||||||||||||||||    
T  48604981 ggatccattgacttcaagagtaaagtctaaacacttactctaaatcttgacccttcatttt 48605041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 20009123 - 20009077
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttca 220  Q
    ||||||||||||||||||||||| |||||||| ||| | ||||||||    
T  20009123 gactccaagagtaagtctaaagagttactccacatcctcacccttca 20009077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 20123312 - 20123262
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttcatttt 224  Q
    ||||||||||||||||||||||| |||||||| ||| | ||||| ||||||    
T  20123312 gactccaagagtaagtctaaagagttactccacatcctcaccctccatttt 20123262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 36671117 - 36671077
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgac 214  Q
    |||||||||||||||| |||  |||||||||||||||||||    
T  36671117 gactccaagagtaagtgtaataacttactccaaatcttgac 36671077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 19990289 - 19990336
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttcat 221  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||    
T  19990289 gactccaagagtaagtctaaagacttactccaaatctaaacccttcat 19990336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 16073358 - 16073311
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttcat 221  Q
    ||||||||||||||||||||||||||| |||||||||  |||||||||    
T  16073358 gactccaagagtaagtctaaagacttattccaaatctaaacccttcat 16073311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 28313853 - 28313900
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacccttcat 221  Q
    |||||||||||||| || ||||| ||||||||||||||||||||||||    
T  28313853 gactccaagagtaactcaaaagagttactccaaatcttgacccttcat 28313900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 4968969 - 4968928
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacc 215  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  4968969 gactccaagagtaagtctataaacttactccaaatcttgacc 4968928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 39773445 - 39773404
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacc 215  Q
    |||||||||||||||||||   ||||||||||||||||||||    
T  39773445 gactccaagagtaagtctattaacttactccaaatcttgacc 39773404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 42023219 - 42023260
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgacc 215  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  42023219 gactccaagagtaagtgtaataacttactccaaatcttgacc 42023260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 6632123 - 6632087
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatct 210  Q
    |||||||||||||||| || |||||||||||||||||    
T  6632123 gactccaagagtaagtttatagacttactccaaatct 6632087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 16518499 - 16518539
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgac 214  Q
    |||||||||||||||| |||  |||||||||||||||||||    
T  16518499 gactccaagagtaagtgtaataacttactccaaatcttgac 16518539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 17238514 - 17238478
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatct 210  Q
    |||||||||||||||| || |||||||||||||||||    
T  17238514 gactccaagagtaagtttatagacttactccaaatct 17238478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 19991086 - 19991042
Alignment:
Q  174 gactccaagagtaagtctaaagacttactccaaatcttgaccctt 218  Q
    |||||||||||||| || ||||| |||||||||||||| ||||||    
T  19991086 gactccaagagtaactcaaaagagttactccaaatcttaaccctt 19991042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 29981274 - 29981326
Alignment:
Q  165 ggatccatcgactccaagagtaagtctaaagacttactccaaatcttgaccct 217  Q
    |||||||| ||||| |||||||||| ||||||||||||||  ||||| |||||    
T  29981274 ggatccattgactctaagagtaagtgtaaagacttactccgcatcttaaccct 29981326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 36877431 - 36877383
Alignment:
Q  83 cattcaccacattaaatagctatttatctaaccatccaacaattatgta 131  Q
    ||||| || ||||||||  |||||||||||| |||||||||||||||||    
T  36877431 cattcgccgcattaaatctctatttatctaaacatccaacaattatgta 36877383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University