View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9902_low_26 (Length: 222)
Name: NF9902_low_26
Description: NF9902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9902_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 25589985 - 25589795
Alignment:
| Q |
13 |
agcagagacgattgagtcagagaggaaagaaccttgtgagtagattgtacagttagatcagccccttgctggagggctgagctaggcagttcagaatgta |
112 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589985 |
agcatagacgattgagtaagagaggaaagaaccttgtgagtagattgtacagttagatcagccccttgctggagggctgagctaggcagttcagaatgta |
25589886 |
T |
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| Q |
113 |
atcctagatgtgctccatgagcttcatcaacaatcaaaggaattttacgagaatgacacaaagcagaaatatcactcaggttactgcaaac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25589885 |
atcctagatgtgctccatgagcttcatcaacaatcaaaggaattttacgagaatgacacaaagcagaaatatcactcaagttactgcaaac |
25589795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 25599637 - 25599447
Alignment:
| Q |
13 |
agcagagacgattgagtcagagaggaaagaaccttgtgagtagattgtacagttagatcagccccttgctggagggctgagctaggcagttcagaatgta |
112 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25599637 |
agcatagacgattgagtaagagaggaaagaaccttgtgagtagattgtacagttagatcagccccttgctggagggctgagctaggcagttcagaatgta |
25599538 |
T |
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| Q |
113 |
atcctagatgtgctccatgagcttcatcaacaatcaaaggaattttacgagaatgacacaaagcagaaatatcactcaggttactgcaaac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25599537 |
atcctagatgtgctccatgagcttcatcaacaatcaaaggaattttacgagaatgacacaaagcagaaatatcactcaagttactgcaaac |
25599447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 25585090 - 25584913
Alignment:
| Q |
25 |
tgagtcagagaggaaagaaccttgtgagtagattgtacagttagatcagccccttgctggagggctgagctaggcagttcagaatgtaatcctagatgtg |
124 |
Q |
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||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25585090 |
tgagtaagagagcaaagaaccttgtgagtagactgtacagttagatcagccccttgctggagggctgagctaggcagttcagaatgaaatcctagatgtg |
25584991 |
T |
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| Q |
125 |
ctccatgagcttcatcaacaatcaaaggaattttacgagaatgacacaaagcagaaatatcactcaggttactgcaaa |
202 |
Q |
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| || ||||||||||||||||||| |||||||||||| ||||||||||| | ||||| ||||||| ||||||||||| |
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| T |
25584990 |
caccgtgagcttcatcaacaatcagaggaattttacgggaatgacacaactcggaaatgtcactcaagttactgcaaa |
25584913 |
T |
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