View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9902_low_27 (Length: 206)
Name: NF9902_low_27
Description: NF9902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9902_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 25589967 - 25589795
Alignment:
| Q |
15 |
agagaggaaagaaccttgtgagtagattgtacagttagatcagccccttgctggagggctgagctaggcagttcagaatgtaatcctagatgtgctccat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25589967 |
agagaggaaagaaccttgtgagtagattgtacagttagatcagccccttgctggagggctgagctaggcagttcagaatgtaatcctagatgtgctccat |
25589868 |
T |
|
| Q |
115 |
gagcttcatcaacaatcaaaggaattttacgagaatgacacaaagcagaaatatcactcaggttactgcaaac |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25589867 |
gagcttcatcaacaatcaaaggaattttacgagaatgacacaaagcagaaatatcactcaagttactgcaaac |
25589795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 25599619 - 25599447
Alignment:
| Q |
15 |
agagaggaaagaaccttgtgagtagattgtacagttagatcagccccttgctggagggctgagctaggcagttcagaatgtaatcctagatgtgctccat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25599619 |
agagaggaaagaaccttgtgagtagattgtacagttagatcagccccttgctggagggctgagctaggcagttcagaatgtaatcctagatgtgctccat |
25599520 |
T |
|
| Q |
115 |
gagcttcatcaacaatcaaaggaattttacgagaatgacacaaagcagaaatatcactcaggttactgcaaac |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25599519 |
gagcttcatcaacaatcaaaggaattttacgagaatgacacaaagcagaaatatcactcaagttactgcaaac |
25599447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 25585084 - 25584913
Alignment:
| Q |
15 |
agagaggaaagaaccttgtgagtagattgtacagttagatcagccccttgctggagggctgagctaggcagttcagaatgtaatcctagatgtgctccat |
114 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |
|
|
| T |
25585084 |
agagagcaaagaaccttgtgagtagactgtacagttagatcagccccttgctggagggctgagctaggcagttcagaatgaaatcctagatgtgcaccgt |
25584985 |
T |
|
| Q |
115 |
gagcttcatcaacaatcaaaggaattttacgagaatgacacaaagcagaaatatcactcaggttactgcaaa |
186 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||| | ||||| ||||||| ||||||||||| |
|
|
| T |
25584984 |
gagcttcatcaacaatcagaggaattttacgggaatgacacaactcggaaatgtcactcaagttactgcaaa |
25584913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University