View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9902_low_4 (Length: 470)
Name: NF9902_low_4
Description: NF9902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9902_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 14 - 456
Target Start/End: Original strand, 4170318 - 4170761
Alignment:
| Q |
14 |
agattgtatacacactttcaaagaaacagcatcgaacaccagttaacacataacagtggaacaatgaagcaacaacccggaaaattaacggtacaaagct |
113 |
Q |
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| T |
4170318 |
agattgtatacacactttcaaagaaacagcatcgaacatcagttaacacataacagtggaacaatgaagcaacaacccggaaaattaacggtacaaagct |
4170417 |
T |
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| Q |
114 |
aaagttgcgcgaaacgacttgcaacgaagcccaccgatcgaaccaattccagattctgtaatatcaacccaataatgcaaa-ccaagggatgacgaatcg |
212 |
Q |
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| T |
4170418 |
gaagttgcgcgaaacgacttgcaatgaagcccaccaaacgaaccaattccagattctgtaatatcaacccaataatgcaaatccaagggatgacgaatcg |
4170517 |
T |
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| Q |
213 |
gagaagaacaacaaacctatgtcataaaacataacaaatctggatcaaacagaaccaaacattacaaatttattaagttcacattagtgttttaaggata |
312 |
Q |
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| T |
4170518 |
gagaagagcaacaaacctatgtcataaaacataacaaatctggatcaaacagaaccaaacattacaaatttattaagttcacattagtgttttaaggata |
4170617 |
T |
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| Q |
313 |
gatctcaataagagacaataatccagtacaaggagatattttgtaggtttcaaagcctgcttccatgaagagtttcttccattcttcctcatttctttct |
412 |
Q |
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| T |
4170618 |
gatctcaataagagacaataatccagtacaaggagatattttgtagttttcaaagcctgcttccatgaagagtttcttccattcttcctcatttctctct |
4170717 |
T |
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| Q |
413 |
tttccatttagacatgaaattgttacattcattaggagctttat |
456 |
Q |
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| T |
4170718 |
tttccatttagacatgaaattgttacattcattaggagctttat |
4170761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 294 - 456
Target Start/End: Complemental strand, 4161229 - 4161067
Alignment:
| Q |
294 |
cattagtgttttaaggatagatctcaataagagacaataatccagtacaaggagatattttgtaggtttcaaagcctgcttccatgaagagtttcttcca |
393 |
Q |
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| T |
4161229 |
cattagtattttaaggatagatctctataagagacattaatccagtaaaaggagatattttgtaatcttggaagcctgcttctataaagagctttttcca |
4161130 |
T |
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| Q |
394 |
ttcttcctcatttctttcttttccatttagacatgaaattgttacattcattaggagctttat |
456 |
Q |
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| T |
4161129 |
ttcttcctcatttctctcttttccattaacacatgaaattgtaacattcatgagtagctttat |
4161067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 303 - 426
Target Start/End: Original strand, 4176443 - 4176566
Alignment:
| Q |
303 |
tttaaggatagatctcaataagagacaataatccagtacaaggagatattttgtaggtttcaaagcctgcttccatgaagagtttcttccattcttcctc |
402 |
Q |
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|||| ||||||||||||||||||||||| |||||||| |||||||||| || ||| || || || ||||| |||||||||||||||||||||||||| |
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| T |
4176443 |
tttatggatagatctcaataagagacaaaaatccagtcaaaggagatatcttatagtcttggaaaccagcttctatgaagagtttcttccattcttcctc |
4176542 |
T |
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| Q |
403 |
atttctttcttttccatttagaca |
426 |
Q |
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|||||| ||||||||||| ||||| |
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| T |
4176543 |
atttctctcttttccattaagaca |
4176566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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