View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9902_low_5 (Length: 452)
Name: NF9902_low_5
Description: NF9902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9902_low_5 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: scaffold0190 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 26 - 436
Target Start/End: Complemental strand, 5660 - 5250
Alignment:
| Q |
26 |
tctatctaattcctcaacatagtatctacttgaaatatgagttccatcaaaatcctctccacaactacaatacatgcatcaaatcataatctttctgact |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5660 |
tctatctaattcctcaacatagtatctacttgaaatatgagttccatcaaaatcctctccacaactacaatacatgcatcaaatcataatctttctgact |
5561 |
T |
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| Q |
126 |
caacttatcatacaatccatctaaccccatgggatctacaattcctcccatttggattcaaccaaaaggggcttctttatcaacatcctttcgaattaga |
225 |
Q |
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| T |
5560 |
caacttatcatacaatccatctaaccccatgggatctacaattcctcccatttggattcaaccaaaaggggcttctttatcaacatcctttcgaattaga |
5461 |
T |
|
| Q |
226 |
tagaacaaatcaaatccaacaccttaaagactctctttcttctacccttgatattttttggcccttcacaggtcgtctcaagatcagaacagaacacgaa |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
5460 |
tagaacaaatcaaatccaacaccttaaagactctctttcttctacccttgatattttttggcccttcacaggtcgtctcaagataacaacagaacacgaa |
5361 |
T |
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| Q |
326 |
gctaatacaatttcgtgttccatcgtgtgcaacaacgaaggtgcactctttgttcacgccgtagcgaaaaacatcagtgttgctgacatagttagaccca |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5360 |
gctaatacaatttcgtgttccatcgtgtgcaacaacgaaggtgcactctttgttcacgccgtagcgaaaaacatcagtgttgctgacatagttagaccca |
5261 |
T |
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| Q |
426 |
cttatcatcct |
436 |
Q |
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| T |
5260 |
cttatcatcct |
5250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 61 - 381
Target Start/End: Original strand, 15743900 - 15744220
Alignment:
| Q |
61 |
tatgagttccatcaaaatcctctccacaactacaatacatgcatcaaatcataatctttctgactcaacttatca---tacaatccatctaaccccatgg |
157 |
Q |
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||||||||| ||| || |||||||||| ||| | | |||||| ||||||| |||| || |||| ||| |||||| ||||||| || |||| |||||| |
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| T |
15743900 |
tatgagttcaatccaagtcctctccaccactccggtccatgcaccaaatcacaatccttgtgacccaaattatcatcatacaatcgatttaacaccatgg |
15743999 |
T |
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| Q |
158 |
gatctacaattcctcccatttggattcaaccaaaaggggcttctttatcaacatcctttcgaattagatagaacaaatcaaatccaacaccttaaagact |
257 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||| ||||||| ||||||| | | ||||| | | ||||||||||| ||||||||||| ||| |
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| T |
15744000 |
gatctacaattcctcccatttggagtcaaccaaaagggccttatttatcatcatccttccaacttagacacatcaaatcaaatcgaacaccttaaacact |
15744099 |
T |
|
| Q |
258 |
ctctttcttctacccttgatattttttggcccttcacaggtcgtctcaagatcagaacagaacacgaagctaatacaatttcgtgttccatcgtgtgcaa |
357 |
Q |
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||||||| || |||||||| ||||| ||||| || ||||||||||| ||| | |||||||||| ||| || || |||||||||||| |||||| |
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| T |
15744100 |
ctctttcatccacccttgaattttttccaccctttactggtcgtctcaaaatc---aaggaacacgaagataacactatctcgtgttccatcacgtgcaa |
15744196 |
T |
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| Q |
358 |
caacgaaggtgcactctttgttca |
381 |
Q |
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||| | |||||||| |||||||| |
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| T |
15744197 |
caatgttggtgcactatttgttca |
15744220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 15190176 - 15190268
Alignment:
| Q |
121 |
tgactcaacttatcatacaatccatctaaccccatgggatctacaattcctcccatttggattcaaccaaaaggggcttctttatcaacatcc |
213 |
Q |
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|||||||||| ||| || ||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| ||||| |
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| T |
15190176 |
tgactcaactgatcgtataattcatttaaccccatgggatcttcaattcctcccatttggatccaaccaaaaggggtttctttatcaccatcc |
15190268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 11970034 - 11969966
Alignment:
| Q |
139 |
aatccatctaaccccatgggatctacaattcctcccatttggattcaaccaaaaggggcttctttatca |
207 |
Q |
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| T |
11970034 |
aatccatttgaccccatgggatctccaattcctcccctttggagccaatcaaaaaggccttctttatca |
11969966 |
T |
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