View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9902_low_8 (Length: 379)
Name: NF9902_low_8
Description: NF9902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9902_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 21 - 369
Target Start/End: Original strand, 41671921 - 41672269
Alignment:
| Q |
21 |
ctagtaagtcttctttttatctgttttggtaaagttgttgatcattatttaatactactcacagtgtagcatcatattaattctgtggttcagtatggtc |
120 |
Q |
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| T |
41671921 |
ctagtaagtcttctttttatctgttttggtaaagttgttgatcattatttaatactactcacagtgtagcatcatattaattctgtggttcagtatggtc |
41672020 |
T |
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| Q |
121 |
cataaatatgtcatacacccatacctactttcaaactttcagttacatgtattaatagcatatgaatgacacttgcaatatatgatcggttttacctgct |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41672021 |
cataaatatgtcatacacccatacctactttcaaactttcagttacatgtattaatagcatatgaatgacacttgcaatatatgatcggttttacctgct |
41672120 |
T |
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| Q |
221 |
tccaacattaaagtcatattgatttttatcatatcattgtagtaaacttgcatggaaagtatttgtattagattgtacggattaactaaaatttaaccct |
320 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41672121 |
tcgaacattaaagtcatattgatttttatcatatcattgtagtaaacttgcatggaaagtatttgtattagattgtacggattaactaaaatttaaccct |
41672220 |
T |
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| Q |
321 |
gaacacactcaatcatttaaacaacttattttattcgcatttacctatg |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41672221 |
gaacacactcaatcatttaaacaacttattttattcgcatttacctatg |
41672269 |
T |
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