View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9903_high_2 (Length: 232)
Name: NF9903_high_2
Description: NF9903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9903_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 21378717 - 21378914
Alignment:
| Q |
20 |
tacttatttggactttggttaggacttgggacgtgttgaacatc--caagtacctatccaatgtttacaggagtatgattaattctttggtttaatatca |
117 |
Q |
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| T |
21378717 |
tacttatttggactttggttaggacttgggacgtgttgaacatcaccaagtacctatccaatgtttacaagagtatgattaattctttggtttaatttca |
21378816 |
T |
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| Q |
118 |
atatcctctcacgatctcacctcttattttatatcatcacatttttagnnnnnnnnnnnnaactaatatcatcacatttttgttgaaatagattgtctct |
217 |
Q |
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| T |
21378817 |
atatcctctcatgatctcacctcttattttatatcatcacatttttag--ttttttttttaactaatatcatcacatttttgttgaaatagattgtctct |
21378914 |
T |
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