View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9903_low_10 (Length: 243)
Name: NF9903_low_10
Description: NF9903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9903_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40761905 - 40762127
Alignment:
| Q |
1 |
gctgagaaaacatcctccatgtgtacacctaaagcatgacttgtggtaaaactcaccttccactgtcaactgtcataaacagaatttcacaattaaagta |
100 |
Q |
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| T |
40761905 |
gctgagaaaacatcctccatgtgtacacctaaagcatgacttgtggtaaaactcaccttccactgtcaactgtcataaacagaatttcacaattaaagta |
40762004 |
T |
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| Q |
101 |
tcagaaatgttttttagacatcagaatttgactccagacattgtgacattttatacgcttttcgattttatatnnnnnnnnnttcctcataatctaaaca |
200 |
Q |
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| T |
40762005 |
tcagaaatgttttttagacatcagaatttgactccagacattgtgacattttatacgcttgtcgattttatat-aaaaaaaattcctcataatctaaaca |
40762103 |
T |
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| Q |
201 |
cactgaaaaccggtgtattatata |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
40762104 |
cactgaaaaccggtgtattatata |
40762127 |
T |
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Back To:
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 42583888 - 42583924
Alignment:
| Q |
104 |
gaaatgttttttagacatcagaatttgactccagaca |
140 |
Q |
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| T |
42583888 |
gaaatgttttttagacatcagaatttgacaccagaca |
42583924 |
T |
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