View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9903_low_12 (Length: 226)
Name: NF9903_low_12
Description: NF9903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9903_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 8067017 - 8066820
Alignment:
| Q |
12 |
aagcatagaaaactaagttaatgtatataaacaaattcacataatcacaataattcatttgattcaataatattaattcattcatggattctgagaatga |
111 |
Q |
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| T |
8067017 |
aagcatagaaaactaaattaatgtatataaacaaattcacataatcacaagaattcatttgattcaataatattaat-cattcatggattctgagaatga |
8066919 |
T |
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| Q |
112 |
gtacaaagcaagtgagctctttgtagctcaagctcacttgtacaatcagatattcagtttcatgagacccgtgtcgatcaagtgggctgttgaacttgg |
210 |
Q |
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| T |
8066918 |
gtacaaagcaagtgagctctttgtagctcaagctcacctgtacaatcagatattcagtttcatgagacccgtgtcgatcaagtgggctgttgaacttgg |
8066820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 8075446 - 8075255
Alignment:
| Q |
12 |
aagcatagaaaactaagttaatgtatataaacaaattcacataatcacaataattcatttgattcaataatattaattcattcatggattctgagaatga |
111 |
Q |
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|||||| | ||||||||||||||||||| |||| |||||||||||||||| || ||| ||||||||||||| ||||||||| |||||||||||| |
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| T |
8075446 |
aagcattgcaaactaagttaatgtatatcaacacattcacataatcacaagaactcaattgattcaataat-------cattcatgggttctgagaatga |
8075354 |
T |
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| Q |
112 |
gtacaaagcaagtgagctctttgtagctcaagctcacttgtacaatcagatattcagtttcatgagacccgtgtcgatcaagtgggctgttgaacttgg |
210 |
Q |
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| T |
8075353 |
gcacaaagcaagtgaactctttgaagttcaagctcacttgtacaatcagttatttagtttcttgagacccgtgtcgatcaagtgggctgttgaacttgg |
8075255 |
T |
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