View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9903_low_15 (Length: 211)
Name: NF9903_low_15
Description: NF9903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9903_low_15 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 22587183 - 22587362
Alignment:
| Q |
15 |
agagaacaccaacgaatcgaatcatgattcgattcatatagcttaaaaagaagtttcaattaaaacttgacacccaaggcacttcataggaaactaggat |
114 |
Q |
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| T |
22587183 |
agagaacaccaacgaatcgaatcatgattcgattcatatagtttaaaaagaagtttgaattaaaacttgacacccaagacacttcataggaaactaggat |
22587282 |
T |
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| Q |
115 |
catggattgataggtgctttaacataagttaactactataaacaagtaaacaataaacataatccaaaataacaagaatc |
194 |
Q |
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| T |
22587283 |
catggattgacaggtgctttaacataagttaactactataaacaagtaaacaataaacataatctaaaataacaagaatc |
22587362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 27236551 - 27236468
Alignment:
| Q |
35 |
atcatgattcgattcatatagc-ttaaaaagaagtttcaattaaaacttgacacccaaggcacttcataggaaactaggatcatg |
118 |
Q |
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| T |
27236551 |
atcatgatctgattcatatagctttaaaaaaaagtttcaa-taaaacttaatacccaagacacttcgtaggaaactaagatcatg |
27236468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 30986622 - 30986671
Alignment:
| Q |
125 |
taggtgctttaacataagttaactactataaacaagtaaacaataaacat |
174 |
Q |
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| T |
30986622 |
taggtgctttaacatatattaattactatgaacatgtaaacaataaacat |
30986671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 17278270 - 17278211
Alignment:
| Q |
115 |
catggattgataggtgctttaacataagttaactactataaacaagtaaacaataaacat |
174 |
Q |
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| T |
17278270 |
catggattgctaggtgctttaacatatgctaactattataaacaaatcaacaataaacat |
17278211 |
T |
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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 224840 - 224690
Alignment:
| Q |
28 |
gaatcgaatcatgattcgattcatatagcttaaaaagaagtttcaattaaaacttgacacccaaggcac-------ttcataggaaactaggatcatgga |
120 |
Q |
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| T |
224840 |
gaatcaaatcatgattcaattcatctagcttaaaga-aggtttcaat-aaaacttgacacacaagacacatgacacttcgtaagaaactaagatcataga |
224743 |
T |
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| Q |
121 |
ttgataggtgctttaacataagt--taactactataaacaagtaaacaataaa |
171 |
Q |
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| T |
224742 |
ttgttaggtgctttaacatatgtgctaactactaagaacatttaaacaataaa |
224690 |
T |
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