View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9903_low_2 (Length: 464)
Name: NF9903_low_2
Description: NF9903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9903_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Original strand, 38739373 - 38739810
Alignment:
| Q |
19 |
tctccctccataccagaatgatcatcttcaccggagtatctcccggtgctacctctttcttccgattcagatgatttggctctagccctatcaaaacctt |
118 |
Q |
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| T |
38739373 |
tctccctccataccagaatgatcatcttcaccggagtatctcccagtgctatctctttcttccgattcagatgatttggctctagccctatcaaaacctt |
38739472 |
T |
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| Q |
119 |
tgattttatcatcgggtctcaacatcttgtttcttactctcgtacctgattcaggagataacctcctccttttaaggaattccttctcatcaatgatttc |
218 |
Q |
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| T |
38739473 |
tgattttatcatcgggtctcaacatcttgtttcttactctcgtacctgattcaggagataacctcctccttttaaggaattccttctcatcaatgatttc |
38739572 |
T |
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| Q |
219 |
accttcatcattaggagagtcgtctccggatgcccatcttgaagatgatatattacgagtaggcacataatcttcaacttttggttgctcagctacctgc |
318 |
Q |
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| T |
38739573 |
accttcatcattaggagagtcgtctccggatgcccatcttgaagatgatatattacgagtaggcacataatcttcaacttttggttgctcagctacctgc |
38739672 |
T |
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| Q |
319 |
ccattaaccaacccctgctctgacaacattgaatgcaaacctataggagactcggcatcttgaactgactcagacaccatagaaggatccaatgctgtcg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
38739673 |
ccattaaccaacccctgctctgacaacattgaatgcaaacctataggagactcggcatctagaactgactcagacaccatagaaggatccattgctgtcg |
38739772 |
T |
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| Q |
419 |
gcaactcgggattctcaagataatgaacttcaactcca |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
38739773 |
gcaactcgggattctcaagataatgaacttcaactcca |
38739810 |
T |
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