View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9903_low_3 (Length: 461)
Name: NF9903_low_3
Description: NF9903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9903_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 13307785 - 13308203
Alignment:
| Q |
18 |
ctatttgtaatatttggcttcctattttggtcaatgtatgtcatatagccttaggtctatatctaaatgaactaattgtgctttaaacttttagttcatt |
117 |
Q |
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| T |
13307785 |
ctatttgtaatatttggcttcctattttggtcaatgtatgtcatatagccttaggtctatatctaaatgaactaattgtgctttaaacttttagttcatt |
13307884 |
T |
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| Q |
118 |
ttattagttgataaaatctatgaacattttgtttacttagtccatgctactcataatttatcactcaaattagctgtatttcattgtaaatatcatcctt |
217 |
Q |
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| T |
13307885 |
ttattagttgataaaatctatgaacattttgtttacttggtccatgctactcataatttatcactcaaattagctgtacttcattgtaaatatcatcctt |
13307984 |
T |
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| Q |
218 |
tatttatctgttaaaaattacct---tgttgcaaagttcaaacaatgtaattttttggcattnnnnnnngtaacatatcaatattggtaattatttttcg |
314 |
Q |
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| T |
13307985 |
tatttatctgttaaaaattaccttaatgttgcaaagttcaaacaatgtaattttttggcatt------------------atattggtaattatttttcg |
13308066 |
T |
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| Q |
315 |
aaaacatccttnnnnnnntcgaaatacaaaagcctatatatagatggactaatccctttgctatgtgcatcatacacaacataataccatggccaactcc |
414 |
Q |
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| T |
13308067 |
aaaacatccttaaaaaaatcgaaatacaaaagcctatatatagatggactaatccctttgctatatgcatcatacacaacataataccatggccaactcc |
13308166 |
T |
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| Q |
415 |
ataccaaaactccttgcaacacaaaaccccttctctg |
451 |
Q |
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| T |
13308167 |
ataccaaaactccttgcaacacaaaaccccttctctg |
13308203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 342 - 451
Target Start/End: Original strand, 13333258 - 13333368
Alignment:
| Q |
342 |
aaaagcctatatatagatggactaatccctttgctatgtgcatcatacacaaca-taataccatggccaactccataccaaaactccttgcaacacaaaa |
440 |
Q |
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||||||||||||||||||||| ||| ||||||||| | |||||||| ||||||| || ||| ||||||||||| | ||||| ||||||| |||||||| |
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| T |
13333258 |
aaaagcctatatatagatggattaacccctttgctctttgcatcattcacaacactactacaatggccaactcaaacccaaagctccttgtgacacaaaa |
13333357 |
T |
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| Q |
441 |
ccccttctctg |
451 |
Q |
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| T |
13333358 |
ccccttctctg |
13333368 |
T |
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