View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9903_low_4 (Length: 395)

Name: NF9903_low_4
Description: NF9903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9903_low_4
NF9903_low_4
[»] chr3 (10 HSPs)
chr3 (190-247)||(26555476-26555533)
chr3 (203-241)||(2125277-2125315)
chr3 (203-241)||(28211740-28211778)
chr3 (190-224)||(52116824-52116858)
chr3 (190-238)||(22418553-22418601)
chr3 (190-241)||(25069246-25069297)
chr3 (205-239)||(43055608-43055642)
chr3 (207-239)||(498035-498067)
chr3 (207-239)||(50385874-50385906)
chr3 (278-306)||(52118379-52118407)
[»] chr1 (12 HSPs)
chr1 (190-306)||(22788391-22788507)
chr1 (192-248)||(18431702-18431758)
chr1 (203-241)||(7786798-7786836)
chr1 (265-305)||(18431649-18431689)
chr1 (190-238)||(37187911-37187959)
chr1 (190-241)||(1014052-1014103)
chr1 (207-248)||(6154642-6154683)
chr1 (207-239)||(2123859-2123891)
chr1 (207-239)||(32940712-32940744)
chr1 (207-239)||(33403441-33403473)
chr1 (207-239)||(38741000-38741032)
chr1 (207-239)||(50158606-50158638)
[»] chr8 (3 HSPs)
chr8 (190-242)||(28535193-28535245)
chr8 (213-241)||(11464469-11464497)
chr8 (207-239)||(29247177-29247209)
[»] chr6 (5 HSPs)
chr6 (189-248)||(16692961-16693020)
chr6 (265-306)||(16693040-16693081)
chr6 (193-241)||(5014167-5014215)
chr6 (265-306)||(5014100-5014141)
chr6 (206-239)||(595543-595576)
[»] chr2 (3 HSPs)
chr2 (190-306)||(16916381-16916491)
chr2 (17-58)||(2584268-2584309)
chr2 (157-189)||(2584137-2584169)
[»] chr7 (6 HSPs)
chr7 (203-241)||(38663016-38663054)
chr7 (265-306)||(46437375-46437416)
chr7 (190-238)||(28998020-28998068)
chr7 (196-239)||(46437312-46437355)
chr7 (207-239)||(46913464-46913496)
chr7 (30-58)||(48185783-48185811)
[»] chr5 (4 HSPs)
chr5 (207-248)||(424823-424864)
chr5 (203-242)||(25634439-25634478)
chr5 (207-246)||(18113827-18113866)
chr5 (207-239)||(34225693-34225725)
[»] chr4 (2 HSPs)
chr4 (189-239)||(51513131-51513181)
chr4 (207-239)||(2917958-2917990)


Alignment Details
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 26555476 - 26555533
Alignment:
Q  190 caggggcggatggagtgtgaaacatggtgtggcagctgccacaccagattcttgccta 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26555476 caggggcggatggagtgtgaaacatggtgtggcagctgccacaccagattcttgccta 26555533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 2125277 - 2125315
Alignment:
Q  203 agtgtgaaacatggtgtggcagctgccacaccagattct 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2125277 agtgtgaaacatggtgtggcagctgccacaccagattct 2125315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 28211778 - 28211740
Alignment:
Q  203 agtgtgaaacatggtgtggcagctgccacaccagattct 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28211778 agtgtgaaacatggtgtggcagctgccacaccagattct 28211740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 52116824 - 52116858
Alignment:
Q  190 caggggcggatggagtgtgaaacatggtgtggcag 224  Q
    |||||||||||||||||||||||||||||||||||    
T  52116824 caggggcggatggagtgtgaaacatggtgtggcag 52116858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 22418553 - 22418601
Alignment:
Q  190 caggggcggatggagtgtgaaacatggtgtggcagctgccacaccagat 238  Q
    |||||||||||  | |||||||||||||||||||| |||||||||||||    
T  22418553 caggggcggatctactgtgaaacatggtgtggcagttgccacaccagat 22418601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 25069246 - 25069297
Alignment:
Q  190 caggggcggatggagtgtgaaacatggtgtggcagctgccacaccagattct 241  Q
    |||||||||| | |||||||||||||||||||||  ||||||||||| ||||    
T  25069246 caggggcggaggcagtgtgaaacatggtgtggcatatgccacaccagtttct 25069297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 43055642 - 43055608
Alignment:
Q  205 tgtgaaacatggtgtggcagctgccacaccagatt 239  Q
    |||||||||||||||||||| ||||||||||||||    
T  43055642 tgtgaaacatggtgtggcagttgccacaccagatt 43055608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 498067 - 498035
Alignment:
Q  207 tgaaacatggtgtggcagctgccacaccagatt 239  Q
    |||||||||||||||||| ||||||||||||||    
T  498067 tgaaacatggtgtggcagttgccacaccagatt 498035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 50385874 - 50385906
Alignment:
Q  207 tgaaacatggtgtggcagctgccacaccagatt 239  Q
    |||||||||||||||||| ||||||||||||||    
T  50385874 tgaaacatggtgtggcagttgccacaccagatt 50385906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 52118379 - 52118407
Alignment:
Q  278 taaggcaagggaaggaaagtggaaattgg 306  Q
    |||||||||||||||||||||||||||||    
T  52118379 taaggcaagggaaggaaagtggaaattgg 52118407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 190 - 306
Target Start/End: Complemental strand, 22788507 - 22788391
Alignment:
Q  190 caggggcggatggagtgtgaaacatggtgtggcagctgccacaccagattcttgcctaannnnnnnnnnnnnnnnatatgcataaacataaggcaaggga 289  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||                ||||| ||||||||| |||||||||    
T  22788507 caggggcggatggagtgtgaaacatggtgtggcaactgccacaccagattcttgcctaattttttatttttttttatatgtataaacatatggcaaggga 22788408  T
Q  290 aggaaagtggaaattgg 306  Q
    |||||||||||||||||    
T  22788407 aggaaagtggaaattgg 22788391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 18431758 - 18431702
Alignment:
Q  192 ggggcggatggagtgtgaaacatggtgtggcagctgccacaccagattcttgcctaa 248  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  18431758 ggggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctagcctaa 18431702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 7786836 - 7786798
Alignment:
Q  203 agtgtgaaacatggtgtggcagctgccacaccagattct 241  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  7786836 agtgtgaaacatggtgtggcagctgtcacaccagattct 7786798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 18431689 - 18431649
Alignment:
Q  265 atatgcataaacataaggcaagggaaggaaagtggaaattg 305  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  18431689 atatgcataaacataaggtacgggaaggaaagtggaaattg 18431649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 37187911 - 37187959
Alignment:
Q  190 caggggcggatggagtgtgaaacatggtgtggcagctgccacaccagat 238  Q
    |||||||||||  | |||||||||||||||||||| |||||||||||||    
T  37187911 caggggcggatctactgtgaaacatggtgtggcagttgccacaccagat 37187959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 1014052 - 1014103
Alignment:
Q  190 caggggcggatggagtgtgaaacatggtgtggcagctgccacaccagattct 241  Q
    |||||||||| | |||||||||||||||||||||  ||||||||||| ||||    
T  1014052 caggggcggaggcagtgtgaaacatggtgtggcatatgccacaccagtttct 1014103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 6154683 - 6154642
Alignment:
Q  207 tgaaacatggtgtggcagctgccacaccagattcttgcctaa 248  Q
    |||||||||||||| ||||||| |||||||||||| ||||||    
T  6154683 tgaaacatggtgtgacagctgcaacaccagattctagcctaa 6154642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 2123891 - 2123859
Alignment:
Q  207 tgaaacatggtgtggcagctgccacaccagatt 239  Q
    |||||||||||||||||| ||||||||||||||    
T  2123891 tgaaacatggtgtggcagttgccacaccagatt 2123859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 32940712 - 32940744
Alignment:
Q  207 tgaaacatggtgtggcagctgccacaccagatt 239  Q
    |||||||||||||||||| ||||||||||||||    
T  32940712 tgaaacatggtgtggcagttgccacaccagatt 32940744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 33403441 - 33403473
Alignment:
Q  207 tgaaacatggtgtggcagctgccacaccagatt 239  Q
    |||||||||||||||||| ||||||||||||||    
T  33403441 tgaaacatggtgtggcagttgccacaccagatt 33403473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 38741000 - 38741032
Alignment:
Q  207 tgaaacatggtgtggcagctgccacaccagatt 239  Q
    |||||||||||||||||| ||||||||||||||    
T  38741000 tgaaacatggtgtggcagttgccacaccagatt 38741032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 50158606 - 50158638
Alignment:
Q  207 tgaaacatggtgtggcagctgccacaccagatt 239  Q
    |||||||||||||||||| ||||||||||||||    
T  50158606 tgaaacatggtgtggcagttgccacaccagatt 50158638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 28535193 - 28535245
Alignment:
Q  190 caggggcggatggagtgtgaaacatggtgtggcagctgccacaccagattctt 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28535193 caggggcggatggagtgtgaaacatggtgtggcagctgccacaccagattctt 28535245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 241
Target Start/End: Complemental strand, 11464497 - 11464469
Alignment:
Q  213 atggtgtggcagctgccacaccagattct 241  Q
    |||||||||||||||||||||||||||||    
T  11464497 atggtgtggcagctgccacaccagattct 11464469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 29247209 - 29247177
Alignment:
Q  207 tgaaacatggtgtggcagctgccacaccagatt 239  Q
    |||||||||||||||||| ||||||||||||||    
T  29247209 tgaaacatggtgtggcagttgccacaccagatt 29247177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 16692961 - 16693020
Alignment:
Q  189 acaggggcggatggagtgtgaaacatggtgtggcagctgccacaccagattcttgcctaa 248  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  16692961 acaggggcggattgagtgtgaaacatggtgtggtagctgccacaccagattcttgcctaa 16693020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 16693040 - 16693081
Alignment:
Q  265 atatgcataaacataaggcaagggaaggaaagtggaaattgg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16693040 atatgcataaacataaggcaagggaaggaaagtggaaattgg 16693081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 5014215 - 5014167
Alignment:
Q  193 gggcggatggagtgtgaaacatggtgtggcagctgccacaccagattct 241  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  5014215 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattct 5014167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 5014141 - 5014100
Alignment:
Q  265 atatgcataaacataaggcaagggaaggaaagtggaaattgg 306  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  5014141 atatgcataaacataaggcatgggaaggaaagtggaaattgg 5014100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 595543 - 595576
Alignment:
Q  206 gtgaaacatggtgtggcagctgccacaccagatt 239  Q
    ||||||||||||||||||| ||||||||||||||    
T  595543 gtgaaacatggtgtggcagttgccacaccagatt 595576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 306
Target Start/End: Complemental strand, 16916491 - 16916381
Alignment:
Q  190 caggggcggatggagtgtgaaacatggtgtggcagctgccacaccagattcttgcctaannnnnnnnnnnnnnnnatatgcataaacataaggcaaggga 289  Q
    |||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||                |||||||||||||||||||| ||||    
T  16916491 caggggcggatgtagagtgaaacatggtgtgtcagctgccacaccagattctagcctaa------ttttttttttatatgcataaacataaggcacggga 16916398  T
Q  290 aggaaagtggaaattgg 306  Q
    |||||||||||||||||    
T  16916397 aggaaagtggaaattgg 16916381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 2584309 - 2584268
Alignment:
Q  17 aaaagttttatttttaagaatttatacttttaatgtaagaac 58  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  2584309 aaaagttttgtttttaagaatttatacttttaatgtaagaac 2584268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 2584169 - 2584137
Alignment:
Q  157 atattcatctttggactaagaatttgctaatta 189  Q
    |||||||||||||||||||||||||||||||||    
T  2584169 atattcatctttggactaagaatttgctaatta 2584137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 38663016 - 38663054
Alignment:
Q  203 agtgtgaaacatggtgtggcagctgccacaccagattct 241  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38663016 agtgtgaaacatggtgtggcagctgccacaccagattct 38663054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 46437375 - 46437416
Alignment:
Q  265 atatgcataaacataaggcaagggaaggaaagtggaaattgg 306  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  46437375 atatgcataaacataaggcacgagaaggaaagtggaaattgg 46437416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 28998020 - 28998068
Alignment:
Q  190 caggggcggatggagtgtgaaacatggtgtggcagctgccacaccagat 238  Q
    |||||||||||  | |||||||||||||||||||| |||||||||||||    
T  28998020 caggggcggatctactgtgaaacatggtgtggcagttgccacaccagat 28998068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 46437312 - 46437355
Alignment:
Q  196 cggatggagtgtgaaacatggtgtggcagctgccacaccagatt 239  Q
    |||||| || |||||||||||||||||||||||||||| |||||    
T  46437312 cggatgtagagtgaaacatggtgtggcagctgccacacaagatt 46437355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 46913496 - 46913464
Alignment:
Q  207 tgaaacatggtgtggcagctgccacaccagatt 239  Q
    |||||||||||||||||| ||||||||||||||    
T  46913496 tgaaacatggtgtggcagttgccacaccagatt 46913464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 48185811 - 48185783
Alignment:
Q  30 ttaagaatttatacttttaatgtaagaac 58  Q
    |||||||||||||||||||||||||||||    
T  48185811 ttaagaatttatacttttaatgtaagaac 48185783  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 424864 - 424823
Alignment:
Q  207 tgaaacatggtgtggcagctgccacaccagattcttgcctaa 248  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  424864 tgaaacatggtgtggcagctgccacaccagattctagcctaa 424823  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 25634478 - 25634439
Alignment:
Q  203 agtgtgaaacatggtgtggcagctgccacaccagattctt 242  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  25634478 agtgtgaaacatggtgtggcagctgccacaccaaattctt 25634439  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 18113866 - 18113827
Alignment:
Q  207 tgaaacatggtgtggcagctgccacaccagattcttgcct 246  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  18113866 tgaaacatggtgtggcagttgccacaccagattctagcct 18113827  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 34225693 - 34225725
Alignment:
Q  207 tgaaacatggtgtggcagctgccacaccagatt 239  Q
    |||||||||||||||||| ||||||||||||||    
T  34225693 tgaaacatggtgtggcagttgccacaccagatt 34225725  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 51513181 - 51513131
Alignment:
Q  189 acaggggcggatggagtgtgaaacatggtgtggcagctgccacaccagatt 239  Q
    ||||||||||||  | |||||||||||||||||||| |||||||| |||||    
T  51513181 acaggggcggatccactgtgaaacatggtgtggcagttgccacactagatt 51513131  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 2917990 - 2917958
Alignment:
Q  207 tgaaacatggtgtggcagctgccacaccagatt 239  Q
    |||||||||||||||||| ||||||||||||||    
T  2917990 tgaaacatggtgtggcagttgccacaccagatt 2917958  T

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