View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9903_low_5 (Length: 363)
Name: NF9903_low_5
Description: NF9903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9903_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 53956179 - 53956516
Alignment:
| Q |
19 |
ttattcgtgcattctaagctttcataaataattaaaagaataggaaatnnnnnnntaa-tcacgtacactccttcttgctttttagcagattatgcttcc |
117 |
Q |
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| T |
53956179 |
ttattcgtgcattctaagctttcataaataattaaaagaatagggaataaaaaaaaaaatcacgtacactccttcttgctttttagcagattatgcttcc |
53956278 |
T |
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| Q |
118 |
tcatcatgagtacaacctgtagtttgagtaagaatcattcattgctccaaaggtcagaaaaattaaaatttaattacaccagtaaagcaatatttgatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53956279 |
tcatcatgagtacaacctgtagtttgagtaagaatcattcattgctccaaaggtcagaaaaattaaaatttaattacaccagtaaagcaatatttgatca |
53956378 |
T |
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| Q |
218 |
caatattaagttaagcttaatctaacggtactgtctttaattctttaaggtatttctggatgtttttagtttcataatcttattcacctaaataaaagta |
317 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53956379 |
caatattaagttaagcttaatttaacggtactgtctttaattctttatggtatttctggatgtttttagtttcataatcttattcacctaaataaaagta |
53956478 |
T |
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| Q |
318 |
gacagacacataaattttccataatcctaacctttgcttc |
357 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
53956479 |
gacag--acataaattttccataatcctaacctttgcttc |
53956516 |
T |
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