View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9903_low_7 (Length: 278)
Name: NF9903_low_7
Description: NF9903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9903_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 11531377 - 11531631
Alignment:
| Q |
1 |
gtatgacatctcaatacgaaaaacagacgattttctaaagtcataatcacgattacatcacattgcctataacaagagaaacacaaatttaagtatacat |
100 |
Q |
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| T |
11531377 |
gtatgacatctcaatacgaaaaacagacgattttctaaagtcataattacgattacatcacgttgcctataacaagagaaacacaaatttaagtatacat |
11531476 |
T |
|
| Q |
101 |
gaaagtttgacaaaccatccttcagtttgaccaatgctgcaacacgattttatccctgcaccgcaagcttagaaatcattggatcatagtgcatgctaac |
200 |
Q |
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| T |
11531477 |
gaaagtttgacaaaccatccttcagtttgaccaatgctgcaacac-attttatccctgcatcgcaagcttagaaatcattggatcatagtgcatgctaac |
11531575 |
T |
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| Q |
201 |
atcagctcctactttaacttgttgtattgcttttagagacattggcagatcatgat |
256 |
Q |
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| T |
11531576 |
atcagctcctactttaaattgttgtattgcttttagagccattggcagatcatgat |
11531631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 31790272 - 31790103
Alignment:
| Q |
51 |
gattacatcacattgcctataacaagagaaacacaaa--tttaagtatacatgaaagtttgacaaaccatccttcagtttgaccaatgctgcaacacgat |
148 |
Q |
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|||||||||| ||| |||||| ||||| |||||||| || |||||||| ||||| |||| ||||| ||||||||||||||||||||||||| |||||| |
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| T |
31790272 |
gattacatcaaattacctatagcaagatcaacacaaagattcaagtatacctgaaactttgtcaaactatccttcagtttgaccaatgctgcagcacgat |
31790173 |
T |
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| Q |
149 |
tttatccctgcaccgcaagcttagaaatcattggatcatagtgcatgctaacatcagctcctactttaac |
218 |
Q |
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||| ||||||||| ||||||||| |||||||||||| ||||||||||||||| || ||||| ||||||| |
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| T |
31790172 |
tttctccctgcactacaagcttagcaatcattggatcgtagtgcatgctaacagcatctccttctttaac |
31790103 |
T |
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