View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9903_low_8 (Length: 259)

Name: NF9903_low_8
Description: NF9903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9903_low_8
NF9903_low_8
[»] chr2 (1 HSPs)
chr2 (18-244)||(27474368-27474594)
[»] chr3 (4 HSPs)
chr3 (18-244)||(5746725-5746951)
chr3 (18-244)||(5783684-5783910)
chr3 (37-244)||(19000118-19000325)
chr3 (185-244)||(18997579-18997638)
[»] chr7 (2 HSPs)
chr7 (37-244)||(14232153-14232360)
chr7 (37-244)||(14236927-14237134)
[»] chr6 (8 HSPs)
chr6 (37-244)||(22840645-22840852)
chr6 (37-244)||(22845418-22845625)
chr6 (103-244)||(34150996-34151135)
chr6 (103-244)||(34163612-34163751)
chr6 (18-114)||(34150879-34150975)
chr6 (18-114)||(34163495-34163591)
chr6 (135-244)||(15526555-15526664)
chr6 (27-114)||(15526680-15526769)
[»] chr1 (2 HSPs)
chr1 (37-244)||(34021979-34022182)
chr1 (23-93)||(3973758-3973828)
[»] chr4 (1 HSPs)
chr4 (26-178)||(5550641-5550795)
[»] chr8 (1 HSPs)
chr8 (26-236)||(33630494-33630706)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 27474368 - 27474594
Alignment:
Q  18 caatgagatagcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagag 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||    
T  27474368 caatgagatagcttggcgcgcaagttaactaattagaagcatttgcatttacatttcatttctaattgtaatttcacatgcatctagttagttagaggag 27474467  T
Q  118 tgatgagctgacactaatgtgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||| |||||||||||||||||||||||||||    
T  27474468 tgatgagctgacactaatgtgtatataactgaatgtaatgaacgttcacaagctaatgaaaatcagttacaaattttctccatttggagctttttctctc 27474567  T
Q  218 tcaaccatggcggtttattcttctctg 244  Q
    ||||||||||| |||||||||||||||    
T  27474568 tcaaccatggcagtttattcttctctg 27474594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 5746951 - 5746725
Alignment:
Q  18 caatgagatagcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagag 117  Q
    |||||||||| |||||||| ||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||  || |||||||||||||||| ||    
T  5746951 caatgagataacttggcgcacaagttaactaattagaagcatttgcatttacattccatttctaattgtattttcatctgcatctagttagttagaatag 5746852  T
Q  118 tgatgagctgacactaatgtgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctc 217  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  5746851 tgatgagctggcactaatgtgtatataactcaatgcaatgaaccttcacaagctaatgaaaatcagttacaagttttcttcatttggagctttttctctc 5746752  T
Q  218 tcaaccatggcggtttattcttctctg 244  Q
    |||||||||| |||| |||||||||||    
T  5746751 tcaaccatggaggttcattcttctctg 5746725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 5783910 - 5783684
Alignment:
Q  18 caatgagatagcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagag 117  Q
    |||||||||| |||||||| ||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||  || |||||||||||||||| ||    
T  5783910 caatgagataacttggcgcacaagttaactaattagaagcatttgcatttacattccatttctaattgtattttcatctgcatctagttagttagaatag 5783811  T
Q  118 tgatgagctgacactaatgtgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctc 217  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  5783810 tgatgagctggcactaatgtgtatataactcaatgcaatgaaccttcacaagctaatgaaaatcagttacaagttttcttcatttggagctttttctctc 5783711  T
Q  218 tcaaccatggcggtttattcttctctg 244  Q
    |||||||||| |||| |||||||||||    
T  5783710 tcaaccatggaggttcattcttctctg 5783684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 37 - 244
Target Start/End: Complemental strand, 19000325 - 19000118
Alignment:
Q  37 gcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagtgatgagctgacactaatg 136  Q
    |||||||||| ||||||||| |||||||||| ||||| |||||||| ||||||||||  || |||||||||||||||| |||||||||||| ||||||||    
T  19000325 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatttgcatctagttagttagaatagtgatgagctggcactaatg 19000226  T
Q  137 tgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctctcaaccatggcggtttatt 236  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||  |||||||||||| ||||||||||||||||||||| |||||||| |||| |||    
T  19000225 tgtatataactgaatgtaatgaacctttacaagtaaatgaaaatcagttacaagttttcttcatttggagctttttctctcttaaccatggtggttcatt 19000126  T
Q  237 cttctctg 244  Q
    ||||||||    
T  19000125 cttctctg 19000118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 18997638 - 18997579
Alignment:
Q  185 tacaagttttctccatttggagctttttctctctcaaccatggcggtttattcttctctg 244  Q
    |||||||||||| ||||||||||||||||||||| |||||||| |||| |||||||||||    
T  18997638 tacaagttttcttcatttggagctttttctctcttaaccatggtggttcattcttctctg 18997579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 37 - 244
Target Start/End: Original strand, 14232153 - 14232360
Alignment:
Q  37 gcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagtgatgagctgacactaatg 136  Q
    |||||||||| ||||||||| |||||||||| ||||| |||||||| ||||||||||  || |||||||||||||||| |||||||||||| ||||||||    
T  14232153 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatctgcatctagttagttagaatagtgatgagctggcactaatg 14232252  T
Q  137 tgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctctcaaccatggcggtttatt 236  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||| |||| |||    
T  14232253 tgtatataactgaatgtaatgaacctttacaagccaatgaaaattagttacaagttttctctatttggagctttttctctctcaaccatggtggttcatt 14232352  T
Q  237 cttctctg 244  Q
    ||||||||    
T  14232353 cttctctg 14232360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 37 - 244
Target Start/End: Original strand, 14236927 - 14237134
Alignment:
Q  37 gcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagtgatgagctgacactaatg 136  Q
    |||||||||| ||||||||| |||||||||| ||||| |||||||| ||||||||||  || |||||||||||||||| |||||||||||| ||||||||    
T  14236927 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatctgcatctagttagttagaatagtgatgagctggcactaatg 14237026  T
Q  137 tgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctctcaaccatggcggtttatt 236  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||| |||| |||    
T  14237027 tgtatataactgaatgtaatgaacctttacaagccaatgaaaattagttacaagttttctctatttggagctttttctctctcaaccatggtggttcatt 14237126  T
Q  237 cttctctg 244  Q
    ||||||||    
T  14237127 cttctctg 14237134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 37 - 244
Target Start/End: Original strand, 22840645 - 22840852
Alignment:
Q  37 gcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagtgatgagctgacactaatg 136  Q
    |||||||||| ||||||||| |||||||||| ||||| |||||||| ||||||||||  || |||||||||||||||| |||||||||||| ||||||||    
T  22840645 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatttgcatctagttagttagaatagtgatgagctggcactaatg 22840744  T
Q  137 tgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctctcaaccatggcggtttatt 236  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||  |||||||||||| |||||| |||||||||||||| |||||||| ||||||||    
T  22840745 tgtatataactgaatgtaatgaacctttacaagtcaatgaaaatcagttacaagttttcttcatttgaagctttttctctcttaaccatggtggtttatt 22840844  T
Q  237 cttctctg 244  Q
    ||||||||    
T  22840845 cttctctg 22840852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 37 - 244
Target Start/End: Original strand, 22845418 - 22845625
Alignment:
Q  37 gcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagtgatgagctgacactaatg 136  Q
    |||||||||| ||||||||| |||||||||| ||||| |||||||| ||||||||||  || |||||||||||||||| |||||||||||| ||||||||    
T  22845418 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatttgcatctagttagttagaatagtgatgagctggcactaatg 22845517  T
Q  137 tgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctctcaaccatggcggtttatt 236  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||  |||||||||||| |||||| |||||||||||||| |||||||| ||||||||    
T  22845518 tgtatataactgaatgtaatgaacctttacaagtcaatgaaaatcagttacaagttttcttcatttgaagctttttctctcttaaccatggtggtttatt 22845617  T
Q  237 cttctctg 244  Q
    ||||||||    
T  22845618 cttctctg 22845625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 103 - 244
Target Start/End: Original strand, 34150996 - 34151135
Alignment:
Q  103 agttagttagaagagtgatgagctgacactaatgtgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccattt 202  Q
    ||||||||||||  |||||||| || ||||||||||||||||||| |||  |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  34150996 agttagttagaatggtgatgagttggcactaatgtgtatataactcaat--aatgaaccttcacaagctaatgaaaatcagttacaagttttctccattt 34151093  T
Q  203 ggagctttttctctctcaaccatggcggtttattcttctctg 244  Q
    |||||||||||| |||||||||||| |||| |||||||||||    
T  34151094 ggagctttttctttctcaaccatggaggttcattcttctctg 34151135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 103 - 244
Target Start/End: Original strand, 34163612 - 34163751
Alignment:
Q  103 agttagttagaagagtgatgagctgacactaatgtgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccattt 202  Q
    ||||||||||||  |||||||| || ||||||||||||||||||| |||  |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  34163612 agttagttagaatggtgatgagttggcactaatgtgtatataactcaat--aatgaaccttcacaagctaatgaaaatcagttacaagttttctccattt 34163709  T
Q  203 ggagctttttctctctcaaccatggcggtttattcttctctg 244  Q
    |||||||||||| |||||||||||| |||| |||||||||||    
T  34163710 ggagctttttctttctcaaccatggaggttcattcttctctg 34163751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 34150879 - 34150975
Alignment:
Q  18 caatgagatagcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaa 114  Q
    |||||||||| |||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||  || ||||||||||||||||    
T  34150879 caatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatttcatctgcatctagttagttagaa 34150975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 34163495 - 34163591
Alignment:
Q  18 caatgagatagcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaa 114  Q
    |||||||||| |||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||  || ||||||||||||||||    
T  34163495 caatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatttcatctgcatctagttagttagaa 34163591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 15526664 - 15526555
Alignment:
Q  135 tgtgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctcca-tttggagctttttctctctcaaccatggcggttt 233  Q
    ||||||| ||||||  |||||||| | |||||||||||||||||| ||  ||||| ||||||||| ||||||||||||  ||| ||| |||||| |||||    
T  15526664 tgtgtatgtaactgtttgtaatgagcattcacaagctaatgaaaa-cagttacaacttttctccactttggagcttttcttctttcatccatggtggttt 15526566  T
Q  234 attcttctctg 244  Q
    |||||||||||    
T  15526565 attcttctctg 15526555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 15526769 - 15526680
Alignment:
Q  27 agcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcaca--tggatctagttagttagaa 114  Q
    |||||||||| ||||||||| | ||||| | ||||||||||||||||   || || |||||||||||||  |  ||||||||||||||||    
T  15526769 agcttggcgcacaagttaactagttagatgtatttgcatttacatttccattttatttgtaatttcacatttacatctagttagttagaa 15526680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 37 - 244
Target Start/End: Complemental strand, 34022182 - 34021979
Alignment:
Q  37 gcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagtgatgagctgacactaatg 136  Q
    |||| ||||| |||||||||||||||||| ||||||| |||||||||| ||||||||  |  ||||| |||||||| | |||||||||||| |||||||     
T  34022182 gcaaattaactaattagaagcatttgcatctacatttcatttctaattataatttcatctccatctaattagttaggatagtgatgagctggcactaat- 34022084  T
Q  137 tgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctctcaaccatggcggtttatt 236  Q
       |||||||| |||||||||||||||||||| |||||||||||||  ||||| |||||||||||| || ||||||||||||||||||||| |||| |||    
T  34022083 ---atataactcaatgtaatgaaccttcacaaactaatgaaaatcagttacaaattttctccatttagaactttttctctctcaaccatggaggttcatt 34021987  T
Q  237 cttctctg 244  Q
    ||||||||    
T  34021986 cttctctg 34021979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 3973758 - 3973828
Alignment:
Q  23 agatagcttggcgcgcaagttaacgaattagaagcatttgcatttac-atttaatttctaattgtaatttca 93  Q
    ||||| |||||| ||||||||||| ||||||| ||||||| |||||| |||| ||||| |||||||||||||    
T  3973758 agataacttggcacgcaagttaactaattagatgcatttgtatttacaatttcatttc-aattgtaatttca 3973828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 178
Target Start/End: Original strand, 5550641 - 5550795
Alignment:
Q  26 tagcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagt---gatg 122  Q
    ||||||||||||||||||||| ||||||| |||||||||||||   |||||||| | |||||||| ||  |  |||||||||||||||  |||    |||    
T  5550641 tagcttggcgcgcaagttaactaattagatgcatttgcatttatgattaatttc-acttgtaattacatttacatctagttagttagagtagttactatg 5550739  T
Q  123 agctgacactaatgtgtatataactgaatgtaatgaaccttcacaagctaatgaaa 178  Q
    ||||| ||| |||||||||||||||   ||| ||||||  |||||| |||||||||    
T  5550740 agctggcaccaatgtgtatataactccttgtcatgaactatcacaatctaatgaaa 5550795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 33630706 - 33630494
Alignment:
Q  26 tagcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagt---gatg 122  Q
    |||||||||| |||||||||| ||||||| ||||||||||||||  |||||||| | |||||||| ||  |  |||||||||||||||  |||    |||    
T  33630706 tagcttggcgtgcaagttaactaattagatgcatttgcatttacgattaatttc-acttgtaattacatttacatctagttagttagagtagttactatg 33630608  T
Q  123 agctgacactaatgtgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctcc-atttggagctttttctctc-tca 220  Q
    |||||  || |||||||||||||||   ||||||||||  ||||||  ||||  ||| ||  |  ||  ||||||| ||||||||||||||||||| |||    
T  33630607 agctggaaccaatgtgtatataactacttgtaatgaactatcacaatgtaat--aaaacacttttaatctttctccaatttggagctttttctctcttca 33630510  T
Q  221 accatggcggtttatt 236  Q
     |||||||||||||||    
T  33630509 tccatggcggtttatt 33630494  T

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