View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9904_high_12 (Length: 256)
Name: NF9904_high_12
Description: NF9904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9904_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 60 - 241
Target Start/End: Complemental strand, 32424519 - 32424339
Alignment:
| Q |
60 |
atacataactttttagatgttcaaatttaatgaaattaattaaccacgatttatattcaaatatacatctggaaatcgtcgttaattgtgttaagtggat |
159 |
Q |
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| T |
32424519 |
atacataa-tttttagatgttcaaatataatgacattaattaaccacgatttatattcaaatatacatctggaaatcgttgttaattgtgttaagtggat |
32424421 |
T |
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| Q |
160 |
ggataatgaattggaacacattgttatattcattaaccacatatgtgaaccatgtcagccatctagattattgtggaatttt |
241 |
Q |
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| T |
32424420 |
ggataatgaattggaacacattgttatattcattaaccacatatgtgaaccatgtcagccatctagattattgtggaatttt |
32424339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 32424600 - 32424549
Alignment:
| Q |
15 |
aataaacatgtcattcaccataactttttaagtgttcaaataaacatacata |
66 |
Q |
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| T |
32424600 |
aataaacatgtcattcaccataactttttaagtgttcaaataaacatacata |
32424549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 37137126 - 37137069
Alignment:
| Q |
142 |
taattgtgttaagtggatggataatgaattggaacacattgttatattcattaaccac |
199 |
Q |
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| T |
37137126 |
taattgtgttcagtggatggctaatgaattgcgacaccttgctatattcattaaccac |
37137069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 3603535 - 3603477
Alignment:
| Q |
140 |
gttaattgtgttaagtggatggataatgaattggaacacattgttatattcattaacca |
198 |
Q |
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| T |
3603535 |
gttaattgtgttaagtggatggttaatgaactgggataccttattacattcattaacca |
3603477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 19808978 - 19809084
Alignment:
| Q |
89 |
atgaaattaattaaccacgatttatattcaaatatacatctggaaatcgtcgttaattgtgttaagtggatggataatgaattggaacacattgttatat |
188 |
Q |
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| T |
19808978 |
atgaaatgtattaaccacaacttttgttcaaatatacacctgagaattgtggttgattgtgttatgtgggcggttaatgagttgtaacaccttgttatat |
19809077 |
T |
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| Q |
189 |
tcattaa |
195 |
Q |
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| T |
19809078 |
tcattaa |
19809084 |
T |
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